Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04271 ATGTCCAATACCACTAAGCTTGTACTTGGTTTGCTTGTTCTCTTTAGTTCTTTGCTTGTTCCCTTTGCAGAGGTTTGCCCAAGGAGTTTTAACTGTGGAGTCCTCGGGGAGTTGTCCTTCCCATTCACCAATTCACCAAACTCACAATGTGGTTTGTATGTAAGGGGATGTGATGATCAAGGTGGAGCCATAGATGTTCATTTGGGAGATGAAGATGAAAATGAAAACCTAACATGGCTTGAAATTGAAAGCATAGGCAACGCCTCTCAAATTACTTCGCTCCATGTCAGAAGTCGTCAGCTTGACAAGAAGATGCGAGACTCCTCCAGAGATTGCAGAATGGAAGATTACAATATTACCCTTCCCCCAGCGACTCCTATAATGTCATTTGAGAAGGAATTTCAATACACACTGACTCTGTGTAGGTGCAACCGAAGCCTCGACATCACTCCCCCTGAATACTTTCAGAACAATGAAGTTCTACTCTGTGGTGAATTTTTGGAGTATTACCTCTACTATGGTCTCTTAATAGGTGATGCGCTTCCTAGTGCTTTCAATTCATGCACAATTGCCCAAATTCCAGCTAATTCTGTACCTATTTCCCAATTAAAAACATCCTATACCACTGAATTTACCTTAAAAGTAACATTGTCTGAGGATTGTTACAAATGTTTCTATGAAAGCGGTGGCCAATGTCGACTTGACAACAAAGGGAATTTTTCTTGTGTTTTTCAAGATCATCAACGTGGGTCCGTGAATGTGCTTGTGGTGGCAACAGCTACTTCAGCTGCTCTGGTTGCAATAATGCTTATGGTCTTGGTATGCTGTTTAAGAAGAAAAGTCACCTCTACATCTATTTTGTTTTGGAAGGGTGAAAATCCAACCCATCAAAACATTGAGATCTTTTTGAAGACACATGAATTCCTTTTAACTAAAAGGTACACTTATTCTGAGATAAGACAGATGACTGACTCCTTCAAAAACAAACTAGGCCAAGGGGGTTATGGAAGTGTATACAAAGGAAAATTACCTGATGGAAGACTTGTTGCAGTGAAGGTTTTAAATGAGTTAAAAGGTAATGGTGAAGAATTCATCAATGAAGTTGCAAGTATCAGCCAAACTTCTCATGTTAACATAGTTAGTCTCTTTGGATTTTGTTTTCAAGGTTCAAAGAGAGCTCTAGTTTATGAATTCATGCCTAATGGTTCACTTGAAAAGTTTACATATGAAGAGAATGATGCAATGGTTGATCGCCAATTGGATTGCAAGACTTTACATGACATTGCAATTGGTACTGCTAGGGGTTTAGAGTATCTACACAGAGGTTGTAACACTAGAATCCTACATTTTGACATCAAACCTCACAATATATTACTTGATGCAGACTTTTGTCCAAAGATTTCAGATTTTGGACTTGCAAAAATATGCACAAGAAAGGAGAGTATTGTTTCCTTGTGGGGTACAAGAGGAACTGCAGGGTATATTGCTCCTGAGGTATTTTCTAGAAATTTTGGGGCTGTGTCACATAAATCAGATGTTTATAGTTTTGGAATGATGGTTTTAGAAATGGTTGGAGGAAGGAAAAAGGGTAGTCATGTGGAAGTTGAGAGTTCTAGTGAAATGTATTTTCCAAATTGGATTTACAAATGCATAGAATTAAATCAAGAACTTGAATTGAGATGTATTAAAAGTACAAATGATTATGCGGTGGCAAAGAAAATGATTGTGGTAAGCTTGTGGTGCATACAAACCGACCCATCAGCTCGGCCAGCTATGAGTAAAGTGGTGGATATGTTAGAAGGAAGCCTTGAGTCATTGGAAATTCCACCCAAACCTTTTTTATCTTCGCCAAAAACATCTCCAGCTCAATATTAG 1875 0.3867 MSNTTKLVLGLLVLFSSLLVPFAEVCPRSFNCGVLGELSFPFTNSPNSQCGLYVRGCDDQGGAIDVHLGDEDENENLTWLEIESIGNASQITSLHVRSRQLDKKMRDSSRDCRMEDYNITLPPATPIMSFEKEFQYTLTLCRCNRSLDITPPEYFQNNEVLLCGEFLEYYLYYGLLIGDALPSAFNSCTIAQIPANSVPISQLKTSYTTEFTLKVTLSEDCYKCFYESGGQCRLDNKGNFSCVFQDHQRGSVNVLVVATATSAALVAIMLMVLVCCLRRKVTSTSILFWKGENPTHQNIEIFLKTHEFLLTKRYTYSEIRQMTDSFKNKLGQGGYGSVYKGKLPDGRLVAVKVLNELKGNGEEFINEVASISQTSHVNIVSLFGFCFQGSKRALVYEFMPNGSLEKFTYEENDAMVDRQLDCKTLHDIAIGTARGLEYLHRGCNTRILHFDIKPHNILLDADFCPKISDFGLAKICTRKESIVSLWGTRGTAGYIAPEVFSRNFGAVSHKSDVYSFGMMVLEMVGGRKKGSHVEVESSSEMYFPNWIYKCIELNQELELRCIKSTNDYAVAKKMIVVSLWCIQTDPSARPAMSKVVDMLEGSLESLEIPPKPFLSSPKTSPAQY. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04271 624 Pfam Protein kinase domain 327 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04271 624 ProSiteProfiles Protein kinase domain profile. 324 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04271 624 Gene3D Transferase(Phosphotransferase) domain 1 399 607 - -
Seca6g04271 624 PANTHER RUST RESISTANCE KINASE LR10-RELATED 290 616 IPR045874 GO:0004672
Seca6g04271 624 FunFam PR5-like receptor kinase 399 611 - -
Seca6g04271 624 SUPERFAMILY Protein kinase-like (PK-like) 304 600 IPR011009 -
Seca6g04271 624 FunFam serine/threonine-protein kinase PBS1-like 295 398 - -
Seca6g04271 624 Gene3D Phosphorylase Kinase; domain 1 300 398 - -
Seca6g04271 624 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Seca6g04271 624 SMART serkin_6 324 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04271 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04271 Seca-Chr6 110468247 110470394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04271 262 615 Receptor kinase-like Gene Family AT4G18250 52.747 4.79e-128 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca6g04271 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04271 - - tpra:123901115 594.349