Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04269 ATGGAAGATACCACTCTCTGCTGCGAACATTTGCCAAATGGGGAATGCATTGAAGTTCATAAAGACGAAGATGGTGCACTAATTGAGTTAGATTGTCAAAATGATTTTGCTGAAGGAAGAAAGGAGTTCGTTGCACCTGCTGTCGGAATGGAGTTTGAATCTTATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGATTTCGTGTAAGGGTGAAGAATTCATGGTTTAAGCGAAATAGCAGAGAAAAAAATGGTGCGGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAATCATTTGAGAAAAGAGACAAGAACTGGTTGTCCTGCAATGATAAGGATGAGGTTGGCGGAGTCTCAAAGATGGAGGATACTTGAGGTTACACTTGAACACAACCATGTCTTAGGTGGTAAGATACACGAACCGATTAAGAAGATGGGAACTGCAACTAAAAGGAAGTCATTGCCTAGTTCTGATGCTGAGGTGCAAACAGTCAAGTTATACCGTGCACTTGTCATAGATGCAGGAGGTAATGGCAATTCAAACTCCAGTGCAAGAGATGATAGAACTTCCTCTGAATTTTCTAATAAGTTGAACCTTAAGAAAGGTGACACACAAGCCATTTATAATTTCCTCTGCCGTATGCAATTGACTAATCCAAACTTCTTTTATTTGATGGATTTCAATGATGAAGGGCATCTGAGGAATGCATTCTGGGCTGATGCTAGGTCCAGGGCTGCATGTGGTTATTTTGGAGATGTTATTTATTTTGACAACACATATTTGTCAAGCAAATATGAAATCCCTCTTGTGGCTTTCATTGGAATAAATCACCATGGTCAATCAGTGTTATTGGGCTGTGGCCTGCTTGCAGGTGAAACAACAAAGTCATATATATGGTTGTTTAGAGGGTGGGTTACATGTATGTCAGGATGTTCTCCCCAAACTATTATTACAGATAGGTGCAAGGCTTTGCAGAGTTCAATTGCAGAAGTTTTTCCTAGATCTCATAATTGTTTTGGCTTGTCATTAATTATGAAAAAAATACCAGAAAAATTGGGATGGTTGCGCAATTATGATGCTATCAGGAAAGCACTGACTAAAGCAGTTTATGAGACGTTGAAAGTGATTGAATTTGAAGCAGCATGGAGATTCATGATTCAACATTTTGGAGTCAGTGAACATGAGTGGCTTCGTTCTCTATATGAAGATCGAGTGCATTGGGCACCGGTATATTTGAAGGACACATTTTTTGCTGGATTGTCTGCAGCACGCCCTGGTGAGAGCATTAGTCCATTTTTTGATAGGTATGTGCACAAACAGACTCCTTTGAAAGAGTTTCTTGATAAGTATGAATTAGCTCTCCATAAGAAGCACAAGGAAGAATCTTTTTCAGATATTGAATCAAGAAGCTCAAGCCCCTTGCTGAAAACAAGATGTTCTTTTGAATCACAGCTCTCTAGAATGTACACAAGAGAAATATTCATGAAGTTCCAATTTGAAGTGGAAGAAATGTATTCGTGTTTTGGTACAACACAATTACATGTGGATGGCCACATTATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACAGAAGGGAAATTAAGGATTTTGAAGTTTTGTACAGTAGGACAGCAGGTGAAGTTCGTTGCATCTGCAGTTGCTTTAACTTTTATGGATATTTATGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTGGAAGAGATACCTTACAAATACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTTTATGTTCCTGATCACAGCTCTGGTAGTGCTGATGATACTAACCGTATTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGAATAATTTCTCTAGATCATTACAATGTAGCGTTGCAAGCTTTTGAAGAGTCACTGAGTAAGGTTCATGAGATACATGACAGATCCTCAAACAGTGAGCAACTACTTGAGGTTGAGGACGAGGGCAATGGGCTTGAGAATGACTGTGGTCATTTATTTGAGATTGATGGAAGTGAACATGAAAATGGTAGGGAGGAAACAACAGTAGTTGATAGTCACAGTGGAGAATCTCAAGGAAAAGACTACGCCCCGGCCCCGCCAGTTGTGGGAATGGAGTTTGATACTTATGATGATGCCTACAACTATTACAATAGCTATGCCAAGGAAATTGGATTTGCTATTCGGGTTAAATCTTCATGGGCCAATCGTAACAGTAAAGAGAAGCGTGGTGCTGTGCTGTGCTGCAACTGTGAGGGTTTCAAAACAATTAAAGAAGCAAATAGTCATAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGATTGAGATTAGCGGAATCTAACAGGTGGAGGGTGGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAGAGAGCACAAAACTCTAAATCACATAAGAGGATGGACAGTGGGGCTAAAAGAAAAGTTGAGCCAACTCTGGATGTTGAAGTACGAACAATCAAGTTATATCGAATGCCAGTTGTAGATGCATCAGGTTATGGGAGCTCAAATTCTAATGAAGGTGGAGCTAGCAACAACATTAATTTTTCCAGGCGTTTGAAACTTAAAAAAGGTGATCCTGAACTTATTTCAAATTACTTCTGCCGCAGTCAAATGATGAATCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAACTGAGGAACATATTTTGGATTGATTCGAGATCAAGGGCTGCATATAGTTATTTTGGTGATGTGGTTGCAATTGACTCAACATGTTTGTCAAACAATTATGAGATTCCACTTGTTGCATTTGTTGGCATTAATCACCATGGGCAATCTATTTTGCTAGGATGTGGTCTGCTTGCAGATGAAACATTTGAAACATATATTTGGTTATTTAGGGCATGGCTTACATGTATGTCTGGTCGCCCTCCACAGACTATTATAACAAACCAGTGTAAGGCCTTGCAAAGTGCAATAGCAGAGGTTTTCCCAAGAGCGCACCTTAGAATTTATCTATCACAAGTGATACAGAGCATTCTTGGATGTTTGGTGCAATTTCAGGAATACGAGGCATTTCAGATGGCACTGACTAAAGTGATATATGACCCTAAAACAGTAGATGAATTTGAAAGGGATTGGGATGATATGACCCAGCATTTTGGAATAAGATGTCATGAAAAACTCCAAACCTTGCATGTGGAACGAGAGCATTGGGCTCCTGTGTACTCCAAGGACACATTTTTTGCTGGAATTTCTGATTATGAAAAGGGTGAATCTTTGGTTCCCTTTTTTAAGGGTCACGTGCATCAACAAACTTCTTTAAAAGAATTCTTTGAGATTTATGAATTAGTTCAGCAAAAAAAGCATAAAACCGAAGCTCTTGATGATCTTGAGTCACTTGATTCAAGCCCATTACTGAAGACAGGATGCTATTATGAGTTGCAACTCTCTAAATTGTACACAAATGCAATATTCAGGAAGTTCCAAGATGAGGTGGTGATGATGTCCTCTTGTTTCAGCGCCACACCAATTCAAACAAACGGGTCTACAGTGACGTACATGGTAAAAGAACGTCAAGGGGAAGAACCTGTAAGAGACACTAGGCTTTTTGAAGTCATGTATGATAAAGCTGGAGCAGAAGTACGCTGCATTTGTGGTTGCTTTAACTTCAAAGGCTACCTGTGCAGACATGCCTTGTATATCCTTAATTATAATGGTGTGGAGGAAATTCCATGTCAATATATTTTGTCAAGATGGAGGAAGGATTTTAAGCGATTGTATGTACCTCAGCTCAGCTCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTATGATCATTTGTACAAACGTGCTATGCAAATAGTTGAAGAAGGGATGATATCCCAAGATCATTATATGGTTTCTTGGCAGGCATTTAAAGAGTCTTTGAATAAGATCCGCCTTGTAGCAGACAAAATTGAATAA 4044 0.3934 MEDTTLCCEHLPNGECIEVHKDEDGALIELDCQNDFAEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKNGAVLCCSSQGFKRTKDVNHLRKETRTGCPAMIRMRLAESQRWRILEVTLEHNHVLGGKIHEPIKKMGTATKRKSLPSSDAEVQTVKLYRALVIDAGGNGNSNSSARDDRTSSEFSNKLNLKKGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNAFWADARSRAACGYFGDVIYFDNTYLSSKYEIPLVAFIGINHHGQSVLLGCGLLAGETTKSYIWLFRGWVTCMSGCSPQTIITDRCKALQSSIAEVFPRSHNCFGLSLIMKKIPEKLGWLRNYDAIRKALTKAVYETLKVIEFEAAWRFMIQHFGVSEHEWLRSLYEDRVHWAPVYLKDTFFAGLSAARPGESISPFFDRYVHKQTPLKEFLDKYELALHKKHKEESFSDIESRSSSPLLKTRCSFESQLSRMYTREIFMKFQFEVEEMYSCFGTTQLHVDGHIIIFLVKERVLIEGNRREIKDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPYKYILSRWKKDYKRLYVPDHSSGSADDTNRIQWSNQLFRSALQVVEEGIISLDHYNVALQAFEESLSKVHEIHDRSSNSEQLLEVEDEGNGLENDCGHLFEIDGSEHENGREETTVVDSHSGESQGKDYAPAPPVVGMEFDTYDDAYNYYNSYAKEIGFAIRVKSSWANRNSKEKRGAVLCCNCEGFKTIKEANSHRKETRTGCLAMIRLRLAESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSGAKRKVEPTLDVEVRTIKLYRMPVVDASGYGSSNSNEGGASNNINFSRRLKLKKGDPELISNYFCRSQMMNPNFFYVMDLNDDGQLRNIFWIDSRSRAAYSYFGDVVAIDSTCLSNNYEIPLVAFVGINHHGQSILLGCGLLADETFETYIWLFRAWLTCMSGRPPQTIITNQCKALQSAIAEVFPRAHLRIYLSQVIQSILGCLVQFQEYEAFQMALTKVIYDPKTVDEFERDWDDMTQHFGIRCHEKLQTLHVEREHWAPVYSKDTFFAGISDYEKGESLVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEALDDLESLDSSPLLKTGCYYELQLSKLYTNAIFRKFQDEVVMMSSCFSATPIQTNGSTVTYMVKERQGEEPVRDTRLFEVMYDKAGAEVRCICGCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPQLSSDNVDISNPVQCYDHLYKRAMQIVEEGMISQDHYMVSWQAFKESLNKIRLVADKIE. 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04269 1347 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Seca6g04269 1347 SMART 26again6 1240 1267 IPR006564 GO:0008270
Seca6g04269 1347 SMART 26again6 560 587 IPR006564 GO:0008270
Seca6g04269 1347 Pfam SWIM zinc finger 1240 1258 IPR007527 GO:0008270
Seca6g04269 1347 Pfam SWIM zinc finger 539 581 IPR007527 GO:0008270
Seca6g04269 1347 Pfam FAR1 DNA-binding domain 738 822 IPR004330 -
Seca6g04269 1347 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Seca6g04269 1347 MobiDBLite consensus disorder prediction 819 842 - -
Seca6g04269 1347 Pfam MULE transposase domain 943 1029 IPR018289 -
Seca6g04269 1347 Pfam MULE transposase domain 262 356 IPR018289 -
Seca6g04269 1347 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 710 1340 IPR031052 GO:0006355
Seca6g04269 1347 ProSiteProfiles Zinc finger SWIM-type profile. 1229 1265 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04269 Seca-Chr6 110454526 110461969 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g04269 MULE 4.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04269 K17604 - gmx:100796448 2417.88