Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04262 ATGGAGGATCAGGCTGTTTTAGGAGTTGGAGCATCTGTTGGCAGAGAGGAAGAGGAAGATGAGTTTTGTAGTTGTTGTGAAGATGAAGATGAAGAAGCATGGAAAGAAACTGAGGAGCTGTTGGTGGTGGAAGGGTTGAAGGATGAGCTTGATGAGTTTTCAGTTAAAATGTTCTTTAAGGGGTTGTCAATAGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGATCATCAAGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCAGAGGAGCCCTTGGTTGACTACTTAGCACTCATGGATGGCTTGCTGGAAGCTGCTCAGAACAAGATCCGCCGGGTTCATGCTTTCACTGATTCTGAGTTGTTGCACGATCAGGTTAGCAATTCAAGATTTAATCTTAACGTTTCTTTGTTTTATGTTCTCTACATAACATCTGAGAAAAATTTGGACATGCCACTTTTGATGGCACTGAGAGAAAGGATTCTGGAACATGTCAATAATTTTGAAACTTTTGTTCTGAAGCTTATACCTAGTACTGATCTTGAGCATCCACTGCAGTTAGCTAAAGTAGCTATTGGACTTGTTACTTTCCCTGTAAATGGCAAGACATTACTTGAGAACTGTTCTATTTGTTGTGATGACAAGCCAGTGCCAATTATGATTACCTTGAAATGTTCACACACATTCTGTTCGCATTGTTTGAGGTCCTATGCTGATGGTAAAGTACAATCTTGTCAAGTTCCTATAAGATGCCCTCAACCAGGATGCAAATATTGCATCTCTGTAAATGAGTGCAGGACTTTTCTTCCATTCACCTCCTTTGAATCTTTTGAGATAGCCCTTTCAGAAGCAAGTATTGTACAGTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTTATCAGCTAGTGCCAGTTCATCTAGTCAGTCAAACAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCACTGTTCTATGAGCTGTGAAGAATACCAGAATCTGCCAGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGAAGAATGATTGAGCTTACTCATGGTTGTTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACAGGAATGGCCAACAGACATGTCAGTGTGCATTTTGGGATGAAGACAACTCTGAAGACTCCTTAACACACTCCCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCTCTGTGATCATGGATGCATACTCAGACCAAGAACGATCACAGCTCGCGCTTATACAAAGGTTCCTAGCTGGTGGTTTTAGTCTTAGTGACCATAATCCCTACCAATCTCCTCCCCGTTGTACAGATAACTATGCAGACACCATGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAGTGA 1605 0.4162 MEDQAVLGVGASVGREEEEDEFCSCCEDEDEEAWKETEELLVVEGLKDELDEFSVKMFFKGLSIAGVENSSSGFSGIGVFMERSSSLPAIRVQKKLDFYAEEPLVDYLALMDGLLEAAQNKIRRVHAFTDSELLHDQVSNSRFNLNVSLFYVLYITSEKNLDMPLLMALRERILEHVNNFETFVLKLIPSTDLEHPLQLAKVAIGLVTFPVNGKTLLENCSICCDDKPVPIMITLKCSHTFCSHCLRSYADGKVQSCQVPIRCPQPGCKYCISVNECRTFLPFTSFESFEIALSEASIVQSDRIYCPFPNCSVLLDPHECLSASASSSSQSNNSCVECPVCQRFICVDCEVPWHCSMSCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRNGQQTCQCAFWDEDNSEDSLTHSLQESEQWAWETFNSLSVIMDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDNYADTMKDLHQLPWLERFVSVISDNYYEDYIQ. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04262 534 ProSiteProfiles TRIAD supradomain profile. 216 434 IPR044066 -
Seca6g04262 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 299 IPR013083 -
Seca6g04262 534 FunFam RBR-type E3 ubiquitin transferase 357 482 - -
Seca6g04262 534 CDD Rcat_RBR_unk 385 421 - -
Seca6g04262 534 SMART ibrneu5 287 359 IPR002867 GO:0008270
Seca6g04262 534 SMART ibrneu5 369 428 IPR002867 GO:0008270
Seca6g04262 534 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 121 480 IPR031127 GO:0004842|GO:0016567
Seca6g04262 534 FunFam RBR-type E3 ubiquitin transferase 55 153 - -
Seca6g04262 534 CDD BRcat_RBR_unk 301 362 - -
Seca6g04262 534 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Seca6g04262 534 ProSiteProfiles Zinc finger RING-type profile. 220 264 IPR001841 -
Seca6g04262 534 SUPERFAMILY RING/U-box 372 436 - -
Seca6g04262 534 Gene3D - 356 482 - -
Seca6g04262 534 FunFam RBR-type E3 ubiquitin transferase 215 300 - -
Seca6g04262 534 Pfam IBR domain, a half RING-finger domain 379 428 IPR002867 GO:0008270
Seca6g04262 534 Pfam IBR domain, a half RING-finger domain 300 359 IPR002867 GO:0008270
Seca6g04262 534 Gene3D - 56 206 IPR036397 GO:0003676
Seca6g04262 534 SUPERFAMILY RING/U-box 218 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04262 Seca-Chr6 110370719 110375643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04262 54 419 C3H Transcription Factor Family AT2G19610 25.397 5.22e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04262 - - gmx:100783040 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04262 6 110370719 110375643 Seca6g04262 6 110370719 110375643 ECH