Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04259 ATGGAAGCTGGTGGCGGTAACGGCGGAAAAGGGATTCAGCAACCGTCTGAGGAGGTGACTCTGCAACCAGAATGGAGGCGGCGAAGTGGCTCCGGCGGAAGAGGACACGACGTGATTCTCCAACCGGAATGGAGGCGACAGAGGCCTAGTGGTTCTCCTTCTCCTAATCCTCCTGAACCTGCCAGTGAAGCACGCGAGGAGGAAGTGCTTCTCCAACCAGAATGGAGGCGTTCAAAGCCAAGTGCAAGTGTTTGGCAACCAGAATGGAGGCGATCAAGACCAACTGCATATCCATGGAACCAAAATTATGGTGTAAGGAAACAGGGAGGGTCGAGTTCCGCTGGTGTTGAAAGAGGCAGAGACCTAAATGCATCTTGGCGAAGTGCTCCAGCTCCGGATTATGCAGTTCCCAAACTAGAAAGACTACAGATATCAAAAGAATTAGGTACATCATCTTGTACCCTCGAAGAAAAGGATAAAATTTCACCTATTCGGAGACCTGACAATGGTGGCACATTAGCTATTCTAACAAATAGGCTTCGTGTCAATCATTTCCCTGTTAAGTTCAATCCTGAGAGCATAATATTGCATTATAATGTTGCTGTCAAACCAAAGTTTTCTTCGAAACCTGGCCAACCTCAGAAATTATCCAAGTCTGATATGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCTGACAGATTGCCCTTGGAGATGACTGCACATGACGGTGCAAGAAATATCTATAGTGCAGTGCAGTTACCAGAAGAGACCTTTACTGTAGAGATCTCTGAAGGAGAGGATGAAAAGACCATGTCATATATTGTTTCCATAACACTTGTTAATAAACTCAGGCTTCACAAGTTAATGGACTATCTTTGTGGGAATACCCTCTCCACTCCTAGGGATATTTTACAAGGGATGGATGTGGTGGTGAAAGAGAATCCAGCTAGACGCACAATTTCTGTGGGACGACACTTCTATCCCACAAATCCTCCTTTGGTAATGAAGGATCTTCACCATGGAACAATAGCGGTTGGGGGTTTTCAGCATAGTTTAAAGCCTACATCTCAAGGTCTGTCCCTATGTGTAGACTACTCAGTGCTGGCTTTCCGAAAACAAATACCAGTCTTGGATTTCTTGCATGAGTGTATTGATAACTTTAAATTGGATGAATTTGAAAACTTTAGGAAATATGTTGAGGAGGCGCTTATTGGATTGAAAGTTAGTGTGACTCATCGTAAATCCAAACAGAAATACATTATTGCAAGATTAACACCTATGATTGCAAGGTATGTCACTTTCCCCATTGACAATGCTAAGGGCTGGAACCTCCCAAAGGATGTTAGTCTTCTTAGCTTTTTCAAAGACAAATATGGCAAGGACATTGTATACAAAGATATTCCTTGCTTAGATTTAGGGAAAGGAAACAAGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGTTGAAGGCCAAAGATATCCCAAGGAGCGGTTGGATGGTATTGCTGCAAAGACATTGAAAACAATGTCGCTGGCTCACCCAACTGAGAGGGAGTTTGCAATACAAAAGATGGTGCAGTCATGTGATGGACCTTGTGGTGGTGATATTATTCGAAATTTTGGAATGAGTGTCAACACCACCATGACAACCATAGTAGGACGTGTAATTGGCCCGCCAGAATTGAAGTTAGGTGATCCAAATGGCAAGGTTATCAAGATAACAGTAGATCTGGAGAAATGTCACTGGAACCTTGCTGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGCATTGGGGCATTGTTGATTTCACTAGTTTTGGCCCATATAAGTACAAATTAAGAGGGAAGGAATTCATTCAAAAGCTTATTGGTAAATACAAAAAATTGGGTATAAACATGCAGGAGCCCGTATGGTATGAAGAATCTTCCATGAAGATACTTGCAAGTTGTGATCTGCTATCTGAATTACTTGAAAAAATTAACAACATTTGTAAATATAACCAAGGTCACCTCCAATTTCTTCTCTGTGTAATGGCTAAAAAAAGTCCAGGTTATAAGTACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTGACACAGTGCTGCTTGTCTCATAGTGCTAATGAAGGGGAAGACAAATTTTATACCAATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTGGAGCTCAGTAATAGGCTCCCTTGCTTTGAGGGTGAAGGACATGTTATGTTTGTAGGGGCTGATGTCAATCATCCTGGTTCTCGGGACACCAGGAGCCCATCAATTGCTGCTGTGGTTGCAACCGTTAATTGGCCTGCTGCAAACCGTTATGCAGCACGTGTTTTCCCTCAGTACAATCGATGTGAGAAAATATTGAACTTTGGGGAGGTTTGCCTTGATCTTGTTGCATGTTATAGGAGGATGAATGGAGTCAAGCCAGAAAGAATTGTTGTTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTACTAGATTTGAAGAGAGCATTCCAAAACTTAAATTACTTCCCAACAATTACTCTTGTTGTAGCACAAAAACGACATCAAACTCGATTGTTTCCAGAGGGTTGGAGGGATGGGTCTTCCAGTGGCAATATTTTGCCAGGAACAGTTGTGGACACAAAAGTTACACACCCTTTTGAATTTGACTTTTACCTTTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCCACTCACTACCATGTCTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAGAAGCTCATATATGAGATGTGCTTCACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCTGTATACTATGCTGACCTTGCGGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGGTGCAATCTCTGAAGTCAGCACCATCTTCATCTTCTAAAGATTCTTCATCAGTATCACCAACAGCTTCATTCAAACAGGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3066 0.4224 MEAGGGNGGKGIQQPSEEVTLQPEWRRRSGSGGRGHDVILQPEWRRQRPSGSPSPNPPEPASEAREEEVLLQPEWRRSKPSASVWQPEWRRSRPTAYPWNQNYGVRKQGGSSSAGVERGRDLNASWRSAPAPDYAVPKLERLQISKELGTSSCTLEEKDKISPIRRPDNGGTLAILTNRLRVNHFPVKFNPESIILHYNVAVKPKFSSKPGQPQKLSKSDMSMIREKLFSDDPDRLPLEMTAHDGARNIYSAVQLPEETFTVEISEGEDEKTMSYIVSITLVNKLRLHKLMDYLCGNTLSTPRDILQGMDVVVKENPARRTISVGRHFYPTNPPLVMKDLHHGTIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKQIPVLDFLHECIDNFKLDEFENFRKYVEEALIGLKVSVTHRKSKQKYIIARLTPMIARYVTFPIDNAKGWNLPKDVSLLSFFKDKYGKDIVYKDIPCLDLGKGNKKNYVPMEFCVLVEGQRYPKERLDGIAAKTLKTMSLAHPTEREFAIQKMVQSCDGPCGGDIIRNFGMSVNTTMTTIVGRVIGPPELKLGDPNGKVIKITVDLEKCHWNLAGRSMVEGKPVEHWGIVDFTSFGPYKYKLRGKEFIQKLIGKYKKLGINMQEPVWYEESSMKILASCDLLSELLEKINNICKYNQGHLQFLLCVMAKKSPGYKYLKWISETKVGIVTQCCLSHSANEGEDKFYTNLALKINAKLGGSNVELSNRLPCFEGEGHVMFVGADVNHPGSRDTRSPSIAAVVATVNWPAANRYAARVFPQYNRCEKILNFGEVCLDLVACYRRMNGVKPERIVVFRDGVSEYQFDMVLNEELLDLKRAFQNLNYFPTITLVVAQKRHQTRLFPEGWRDGSSSGNILPGTVVDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIGVQSLKSAPSSSSKDSSSVSPTASFKQGFYRLHADLENIMFFI. 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04259 1021 ProSiteProfiles Piwi domain profile. 676 975 IPR003165 GO:0003676
Seca6g04259 1021 Pfam Argonaute linker 1 domain 323 374 IPR014811 -
Seca6g04259 1021 SMART DUF1785_2 322 375 IPR014811 -
Seca6g04259 1021 MobiDBLite consensus disorder prediction 1 118 - -
Seca6g04259 1021 Gene3D - 558 739 - -
Seca6g04259 1021 Pfam PAZ domain 380 507 IPR003100 GO:0005515
Seca6g04259 1021 FunFam Protein argonaute 7 370 496 - -
Seca6g04259 1021 SUPERFAMILY Ribonuclease H-like 668 975 IPR012337 -
Seca6g04259 1021 CDD PAZ_argonaute_like 376 491 - -
Seca6g04259 1021 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 179 976 - -
Seca6g04259 1021 SMART Piwi_a_2 676 974 IPR003165 GO:0003676
Seca6g04259 1021 Pfam Piwi domain 677 971 IPR003165 GO:0003676
Seca6g04259 1021 Pfam N-terminal domain of argonaute 179 313 IPR032474 -
Seca6g04259 1021 SUPERFAMILY PAZ domain 371 531 IPR036085 GO:0005515
Seca6g04259 1021 Gene3D paz domain 370 496 - -
Seca6g04259 1021 CDD Piwi_ago-like 539 973 IPR045246 -
Seca6g04259 1021 SMART PAZ_2_a_3 376 518 IPR003100 GO:0005515
Seca6g04259 1021 MobiDBLite consensus disorder prediction 95 109 - -
Seca6g04259 1021 Gene3D - 746 1021 IPR036397 GO:0003676
Seca6g04259 1021 ProSiteProfiles PAZ domain profile. 376 492 IPR003100 GO:0005515
Seca6g04259 1021 MobiDBLite consensus disorder prediction 21 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04259 Seca-Chr6 110345971 110350177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04259 180 975 Eukaryotic Initiation Factors Gene Family AT1G48410 37.055 2.06e-146 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04259 K11593 - gmx:100783571 1674.83