Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04257 ATGGCTCATTCAGCTGAACCCTCTTCATCTTTGAGCTTCACTTCATCTTCCCATTTATCAAATGGCTCTGTTAGCCACAACATATCCTCTTCTTATGCCTCTGATCCTGGACTTAACCTTGAGGTTATCAGTTTGAGTAAGCTTAGCTCTAATTTAGAGCAGCTTTTGATTGATCCTGATTGTGATTACAGTGATGCCGACATCATTGTGGAGGGAAATCCTGTCAGTATCCATCGATGTATTCTGGGTTCTAGGAGTAAGTTTTTCCATGACTTATTCAAGAAGGAGAAAGGATCATCAGAGAAAGGAGGAAAATTGAAGTATTGCATGAATGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTGGGCTATGTATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCTACATGTGTTGACAATGTGTGTGCCCATGATGCTTGTGGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGCGACGTCTTCTTAACTTTGTAGGAAAGGCTCTTGTGGAAGATGTCATCCCAATCCTTATGGTTGCTTACCATTGTCAATTGAATCAACTTGTCATTCAATGTGTTGACAGGGTAGCAAGATCAGACCTTGACCAGATCTCAATTGAAAAAGAGCTTCCCCTTGAGCTCTCAGAAAAAGTTAAATTGCTCCGCCGCAACCCTCAGCAAGATGCTGAAAATGATGCTTCTGAAGAGGATGCTTTGTCTCTAAAACGAATCACTAGAATACACAAGGCATTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTCTAAATGAGTCAGACATTACTTTAGATAAAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGACCCCAAGGTTGTTTCTGAGGTACTTAGTTTGGCTCTGGCTAATGTCAATCTTCGGAATTCTCGGGGGTACACAGTGCTTCACATTGCTGCTATGCGTAAGGAGCCTTCCATTATAGTATCTCTTCTTACAAAAGGGGCTTGTGCATCAGATTTTACTTTTGATGGTCAAAGCGCTGTTAGTATTTGTAGGAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACAGAACAGGGGAAAGAAACAAACAAAGATAGGATATGCATTGATGTTCTTGAAAGAGAAATGCGGAGGAATCCAATGGCTGGGGATGCCTCTGTTACTTCCCATACAATGGCTGATGATCTCCACATGAAGCTACTATACCTTGAGAACAGAGTGGCATTTGCAAGACTATTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCACATGCTGAGACAACATCTGAGTTTGCTGGTCTTACAACATCAAAAGGTTCAAATGGAAACTTAAGAGAGGTTGATCTCAATGAGACTCCCATAATGCAAAACAAAAGACTTCTATCTAGGATGGAAGCCCTTATGAAAACAGCAGTGGAAATGGGGCGGCGTTACTTTCCTCATTGCTCAGAAGTGCTAGACAAATTCATGGAGGATGATCTACCTGACTTGTTTTACCTTGAGAAGGGTACCCAAGAAGAGCAGAGAGTGAAGAGGATGCGTTTCATGGAACTTAAAGATGATGTAAACAAGGCTTTCAACAAGGACAAGGCTGAGTTTAGCCTTTCTGGGATTTCATCTTCATCATCCTCGACATCCCTTAGAGATTCTGTACATTACAAGGCTAGAAAAGTGTGA 1767 0.4177 MAHSAEPSSSLSFTSSSHLSNGSVSHNISSSYASDPGLNLEVISLSKLSSNLEQLLIDPDCDYSDADIIVEGNPVSIHRCILGSRSKFFHDLFKKEKGSSEKGGKLKYCMNDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDNVCAHDACGPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILMVAYHCQLNQLVIQCVDRVARSDLDQISIEKELPLELSEKVKLLRRNPQQDAENDASEEDALSLKRITRIHKALDSDDVELVKLLLNESDITLDKANALHYAAAYCDPKVVSEVLSLALANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDFTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMAGDASVTSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLTTSKGSNGNLREVDLNETPIMQNKRLLSRMEALMKTAVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRVKRMRFMELKDDVNKAFNKDKAEFSLSGISSSSSSTSLRDSVHYKARKV. 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04257 588 SMART ANK_2a 267 295 IPR002110 GO:0005515
Seca6g04257 588 SMART ANK_2a 330 362 IPR002110 GO:0005515
Seca6g04257 588 SMART ANK_2a 296 326 IPR002110 GO:0005515
Seca6g04257 588 PANTHER REGULATORY PROTEIN NPR3 10 580 IPR044292 GO:0009862|GO:2000022|GO:2000031
Seca6g04257 588 Pfam NPR1/NIM1 like defence protein C terminal 372 575 IPR021094 -
Seca6g04257 588 SUPERFAMILY Ankyrin repeat 259 373 IPR036770 -
Seca6g04257 588 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Seca6g04257 588 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Seca6g04257 588 CDD BTB_POZ_NPR_plant 47 190 - -
Seca6g04257 588 Gene3D - 264 404 IPR036770 -
Seca6g04257 588 FunFam Regulatory protein NPR3 38 222 - -
Seca6g04257 588 MobiDBLite consensus disorder prediction 566 588 - -
Seca6g04257 588 FunFam regulatory protein NPR3-like 264 404 - -
Seca6g04257 588 Gene3D Potassium Channel Kv1.1; Chain A 38 222 IPR011333 -
Seca6g04257 588 SUPERFAMILY POZ domain 48 188 IPR011333 -
Seca6g04257 588 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Seca6g04257 588 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Seca6g04257 588 Pfam BTB/POZ domain 62 179 IPR000210 GO:0005515
Seca6g04257 588 SMART BTB_4 64 190 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04257 Seca-Chr6 110323569 110328728 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca6g04257 NPR1_like_C 1.1e-95 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04257 K14508 - gmx:100217338 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04257 6 110323569 110328728 Seca6g04257 6 110323569 110328728 ECH