Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04247 ATGGACGTCAAATGTCAAGGTTGCTTCAATATAACCACCGTATTCAGTCACTCCCAAACGGTTGTTGTTTGTGGGAATTGCCAGACAGTGTTGTGCCAGCCAACTGGTGGCAGAGCTAGGCTAACAGAGGGGTGCTCCTTCAGGAAGAAGGGAGATTAG 159 0.4906 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD. 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04247 52 ProSitePatterns Ribosomal protein S27e signature. 4 36 IPR000592 GO:0003735|GO:0005840|GO:0006412
Seca6g04247 52 Gene3D - 1 51 IPR023407 -
Seca6g04247 52 Pfam Ribosomal protein S27 1 50 IPR000592 GO:0003735|GO:0005840|GO:0006412
Seca6g04247 52 FunFam 40S ribosomal protein S27 1 52 - -
Seca6g04247 52 SUPERFAMILY Zn-binding ribosomal proteins 1 50 IPR011332 GO:0006412
Seca6g04247 52 PANTHER 40S RIBOSOMAL PROTEIN S27 1 52 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04247 Seca-Chr6 110250601 110251722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04247 1 52 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 92.308 8.25e-33 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04247 K02978 - sspl:121750304 115.931