Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04242 ATGAAAGAAGGGGGTGGAAGGAAGCAGGGTGCAACCTCACCCTGTGCTGCATGCAAACTTCTGAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCCTATTTCCCTGCGGATGAACCCCAGAAGTTTGCAAATGTGCACAAGGTTTTTGGTGCTAGCAATGTTAACAAAATGCTTCAGGACCTACCAATGCATCAACGAGGGGATGCAGTGAGTAGCATGGTGTATGAGGCCAATGCCAGAGTCCGAGACCCTGTGTATGGGTGTGTTGGGGCCATTTCTTCTCTTCAGCAACAGATTGATGTGTTACAGACCCAATTGGCCCTGGCCCAAGCTGAAGTGGTACACCTTAGGGTGCGCCAAAATAGATGTTTTTCCAATCATGGCCTTAGATCCAATAGCCCAACTAGTAGTGGGTCCCCATCATCCAAGATCATGGACTCACAAGCTAAGCCTATTTTTGACATGGAAATTGGGGTGGACCAGGCCAGCTATGGTGGTTCAATGTGGTAA 513 0.4854 MKEGGGRKQGATSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVRQNRCFSNHGLRSNSPTSSGSPSSKIMDSQAKPIFDMEIGVDQASYGGSMW. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04242 170 Coils Coil 93 113 - -
Seca6g04242 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 137 - -
Seca6g04242 170 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Seca6g04242 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04242 Seca-Chr6 110209598 110212740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04242 1 170 AS2 family AT1G31320 80.117 2.80e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca6g04242 LOB 1.7e-43 No_clan