Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04232 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCCGCTCCCTCCGCCGCCACCGCCGCCGTTGTAGCTGCACCTTCCGGTCCCCTCGTCCCGCACGATTCCTCATCGGCTGCTTCTGCCGTGGCTAACGGTGGCGCTGCCGCAGCCTCCGTTCCCTTGGCTGTGGACCCCGCGGCCGGCAATGTTCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTTCGCAGCCTGTGCATGAAAGGCGACGCGTGCGGGTTCTTGCACCAGTACGACAAGGCCCGGATGCCGGTGTGTCGGTTTTTCAGACTGTACGGGGAGTGCCGCGAGCAGGATTGCGTGTATAAGCACACCAATGAAGATATCAAGGAGTGTAACATGTATAAGTTAGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTGCTGGACCTCCCCCTCCCGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCTTACAATTATAACAACAACAAATTTTTTCAACAAAGGGGTACTAGCTATACTCAACAAGTAGAAAAATCTCAGCTTCCTCAAGGAATTAATTCTACAAACCAAGGTGTGGCTGGAAAACCATTAGCAGCAGAGTCAGGAAATGTCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAGGCAAGTCAGAGCCAAGTGCAAAATCTTGCTAATGGCCAGCCCAATCAAGCCAATAGAACTGCAACCCCTTTGCCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTGAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGGAACTGGAAATATGCTCACGGAACAGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGTGAGCAGTTAGCATCCTTGCTTTATCTTGAGCCGGATAGTGAACTCATGGCTATCTCAGTTGCAGCAGAGTCTAAGCGAGAAGAGGAAAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAGGAGGAGGAGAGCTTTGGTCATGGTGTAGGACCAGTTGGTCAAGGCAGAGGTAGGGGTAGAGGTATGATGTGGCCGCCTCACATGCCTCTTGGGCGTGGAGCCAGACCCATCCCTGGAATGCAAGGTTTTAACCCTGTAATGATGGGTGATGGATTATCCTATGGACCTGTTGGACCTGATGGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGAGCTTTTGCCCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGCCCCCCAGCAGCAATGATGTTTCGTGGGCGGCCCTCACAACCTGGGATGTTTCCAGGTGGTGGATTTGGGATGATGATGAATCCTGGACGTGCTCCCTTTATGGGGGGGATGGGTGTTGCAGGTGCAAATCCACCAAGAGCTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCACCTCCTCCCCCACTTCAGAATGCAAATCGTGTTCCCAAGAGAGATCAAAGGACTAATGATCGGAATGATAGGTATGGTTCAGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGGACCTGATGATGACATGCAGTATCAGCAAGGATACAAAGGAAACCAGGATGATCAATATGCCGGTGTAAACAACTTCAGGAATGACGATAGTGAAAGTGAGGATGAGGCACCTAGGCGATCCAGACATGGAGAGGGAAAAAAGAAACGCGAAGCTTAG 2079 0.4911 MEDSEGVLSFDFEGGLDAAPSAATAAVVAAPSGPLVPHDSSSAASAVANGGAAAASVPLAVDPAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPPVEEVLQKIQHLYSYNYNNNKFFQQRGTSYTQQVEKSQLPQGINSTNQGVAGKPLAAESGNVQQQQQVQQSQQQASQSQVQNLANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPVGQGRGRGRGMMWPPHMPLGRGARPIPGMQGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRAFAPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRAPFMGGMGVAGANPPRAGRPVNMPPMFPPPPPPLQNANRVPKRDQRTNDRNDRYGSGSEQGKSQDMLSQSGGPDDDMQYQQGYKGNQDDQYAGVNNFRNDDSESEDEAPRRSRHGEGKKKREA. 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04232 692 MobiDBLite consensus disorder prediction 412 471 - -
Seca6g04232 692 CDD YTH 263 397 IPR007275 GO:0003723
Seca6g04232 692 ProSiteProfiles YTH domain profile. 262 397 IPR007275 GO:0003723
Seca6g04232 692 MobiDBLite consensus disorder prediction 611 625 - -
Seca6g04232 692 MobiDBLite consensus disorder prediction 587 606 - -
Seca6g04232 692 SMART c3hfinal6 129 153 IPR000571 GO:0046872
Seca6g04232 692 SMART c3hfinal6 101 127 IPR000571 GO:0046872
Seca6g04232 692 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Seca6g04232 692 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 68 129 - -
Seca6g04232 692 Pfam YT521-B-like domain 262 324 IPR007275 GO:0003723
Seca6g04232 692 Pfam YT521-B-like domain 341 396 IPR007275 GO:0003723
Seca6g04232 692 Gene3D - 69 130 - -
Seca6g04232 692 MobiDBLite consensus disorder prediction 436 454 - -
Seca6g04232 692 SUPERFAMILY CCCH zinc finger 73 104 IPR036855 GO:0046872
Seca6g04232 692 MobiDBLite consensus disorder prediction 626 667 - -
Seca6g04232 692 MobiDBLite consensus disorder prediction 579 692 - -
Seca6g04232 692 MobiDBLite consensus disorder prediction 668 692 - -
Seca6g04232 692 MobiDBLite consensus disorder prediction 192 255 - -
Seca6g04232 692 Gene3D ph1033 like domains 239 400 - -
Seca6g04232 692 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 34 685 IPR045168 -
Seca6g04232 692 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Seca6g04232 692 ProSiteProfiles Zinc finger C3H1-type profile. 73 100 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04232 Seca-Chr6 110114931 110126838 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca6g04232 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04232 K14404 - gmx:100802826 1158.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04232 6 110114931 110126838 Seca6g04232 6 110114931 110126838 ECH