Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04228 ATGAGTTCACTTCGTGTTACATTAACAGCTCTATGCTGTGCATTGATTGTGGTAATTGGAGCACTTCCTTTTCCATCAAACGCACAGCTTGATCCATCGTTTTACAGGAATACATGTCCGAAGGTGCATTCAATTGTACGCGAAGTCGTAAGGGAAGTTTCAAAGAAAGATCCGCGTATGCTTGCCAGTCTCGTTAGGCTTCACTTCCATGACTGTTTTGTTCAAGGCTGTGATGCATCAGTTTTGCTAAATGACACCTCTACCATTGTGAGTGAGCAAACAGCTTTGCCAAACAACAACTCATTGAGAGGTTTGGATGTTGTGAATCAGATCAAAACAGCTGTGGAAAATGCTTGTCCTGGTGCTCAAGGTCCTGATTGGAAAGTACCTTTGGGAAGAAGGGATGGTGTAACAGCCAACCAAAGCCTTGCTAATAAAAACCTTCCAGCTCCTTTCTTCACTCTTGATCAACTTAAAAAAGCCTTTGCTGATCAAGGCCTCAACACTACTGATCTAGTTGCACTCTCAGCTCATTGCTCTTTATTCGTAAGTCGATTGTACAACTTCAGCAACAGTGGCAAACCTGATCCAACTCTTAACACAGCTTACTTACAAGAATTGAGCAAAATATGTCCAAATGGTGGACCTGGGACTAACCTCGTCAATTTTGACCCAACCACTCCTGACACATTTGATAAGAACTACTACTCCAATCTTCAAGTTCAAAAAGGCTTACTTCAGAGTGATCAAGAATTGTTTTCAACATCTGGTGCAGTAGTGACAGCTGTTAGCTGTGTATTGGTTTTGCTAATAGGAGCACTTCCTTTGTCTTCAGATGCACAACTAGATAACTCTTTTTACAGGGACACTTGTCCCACAGTGCATTCAATTGTACGTGAAGTCATTAGAAATGTTTCTAAATCAGATCCCCGTATGCTTGCCAGTCTCGTCAGGCTTCATTTTCATGACTGTTTCGTTCAAGGTTGTGATGCATCAGTCTTGCTGAATGATACCGCTACCATTGTGAGCGAGCAAACAGCTTTGCCAAACAACAACTCATTAAGAGGTTTGGATGTTGTGAATCAGATCAAAACAGCTGTCGAAAATGCTTGTCCTAATACAGCTCATGGACCTGATTGGAAAGTTCCATTGGGAAGGAGGGATAGTTTAACAGCAAATCAAACCCTTGCCAATCAAAATCTTCCAGCTCCCTTTTTTAACCTAACTCAACTCATATCCTCATTTGCTGCACAAGGCCTCAATGTTACTGATCTAGTTGCACTCTCAGGTGCACATACATTTGGCAGAGCTCACTGCAGTACTTTCGTTAATCGATTATACAATTTCAGCAACACTGACACAACCTACTTACAAACACTTCAAGCAATATGCCCCAATGGTGGACCTGGTACCAACCTCACCAATTTGGACCCCACCACTCCTGATACATTTGACTCCAACTACTACTCCAATCTTCAGCTTCAAATGGGCTTGTTTCAGAGTGACCAAGAGCTGTTTTCCACAACCGGTGCAGATACTATTGCCATTGTCAATAGTTTCAGTAGTAACCAAACTCTTTTCTTTGAAAACTTTAAGGCCTCAATGATAAAAATGAGTAAGATTGGAGTGTTAACTGGATCCCAAGGAGAAATTAGAAAGCAATGTAACTTTGTTAATGGGAATTCTGTTGGACTTGCTACTCAAGCCACCAAAGAATCATCAGAAGATGGCATGGTTAGCTCAATCTAA 1749 0.4157 MSSLRVTLTALCCALIVVIGALPFPSNAQLDPSFYRNTCPKVHSIVREVVREVSKKDPRMLASLVRLHFHDCFVQGCDASVLLNDTSTIVSEQTALPNNNSLRGLDVVNQIKTAVENACPGAQGPDWKVPLGRRDGVTANQSLANKNLPAPFFTLDQLKKAFADQGLNTTDLVALSAHCSLFVSRLYNFSNSGKPDPTLNTAYLQELSKICPNGGPGTNLVNFDPTTPDTFDKNYYSNLQVQKGLLQSDQELFSTSGAVVTAVSCVLVLLIGALPLSSDAQLDNSFYRDTCPTVHSIVREVIRNVSKSDPRMLASLVRLHFHDCFVQGCDASVLLNDTATIVSEQTALPNNNSLRGLDVVNQIKTAVENACPNTAHGPDWKVPLGRRDSLTANQTLANQNLPAPFFNLTQLISSFAAQGLNVTDLVALSGAHTFGRAHCSTFVNRLYNFSNTDTTYLQTLQAICPNGGPGTNLTNLDPTTPDTFDSNYYSNLQLQMGLFQSDQELFSTTGADTIAIVNSFSSNQTLFFENFKASMIKMSKIGVLTGSQGEIRKQCNFVNGNSVGLATQATKESSEDGMVSSI. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04228 582 PRINTS Plant peroxidase signature 423 435 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 PRINTS Plant peroxidase signature 475 490 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 PRINTS Plant peroxidase signature 315 335 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 PRINTS Plant peroxidase signature 491 508 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 PRINTS Plant peroxidase signature 533 546 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 PRINTS Plant peroxidase signature 291 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 FunFam Peroxidase 149 266 - -
Seca6g04228 582 PRINTS Haem peroxidase superfamily signature 376 388 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 PRINTS Haem peroxidase superfamily signature 424 439 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 PRINTS Haem peroxidase superfamily signature 477 492 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 PRINTS Haem peroxidase superfamily signature 313 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 CDD secretory_peroxidase 281 558 IPR033905 GO:0004601|GO:0042744
Seca6g04228 582 Gene3D Peroxidase, domain 2 402 538 - -
Seca6g04228 582 Gene3D Peroxidase, domain 2 149 258 - -
Seca6g04228 582 PANTHER PEROXIDASE 72-RELATED 279 558 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 SUPERFAMILY Heme-dependent peroxidases 281 559 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 Gene3D - 286 559 - -
Seca6g04228 582 Gene3D - 34 148 - -
Seca6g04228 582 SUPERFAMILY Heme-dependent peroxidases 29 259 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 ProSiteProfiles Plant heme peroxidase family profile. 29 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 ProSiteProfiles Plant heme peroxidase family profile. 281 559 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 ProSitePatterns Peroxidases proximal heme-ligand signature. 424 434 IPR019793 -
Seca6g04228 582 CDD secretory_peroxidase 29 256 IPR033905 GO:0004601|GO:0042744
Seca6g04228 582 Pfam Peroxidase 298 522 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 Pfam Peroxidase 123 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 Pfam Peroxidase 46 121 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04228 582 FunFam Peroxidase 402 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04228 Seca-Chr6 110061554 110072921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04228 267 560 Peroxidase AT5G06720 54.717 7.73e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04228 K00430 - gmx:112997600 548.895