Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04223 ATGAGCTCTCTTATTAGCCATATCACAGCTTTGTGCTGTTTGGTGGTTGTGCTAATTGGAGCACTTCCTTTCTCCTCAGATGCACAACTTGATCCCTCCTTCTACAGGGACACTTGTCCAAAAGTGCATTCAATTGTGCGTGAAGTTATCAGAAATGTTTCAAAATCAGATCCCCGCATGCTTGGCAGTCTCATGAGGCTCCACTTTCATGACTGTTTCGTTCAAGGCTGTGATGCATCAATCTTGCTGAACACCACTGCTACCATTGTGAGTGAGCAAACAGCTTTTGGAAATAACAACTCCATAAGAGGTTTGGATGTTGTGAATCAGATCAAAACAGCCGTCGAAAATGCTTGTCCTAATACAGTCTCTTGTGCGGATATTCTTGCTCTTGCTGCTGAGATATCCTCTGTTCTGGCTAATGGTCCTGATTGGAAAGTTCCATTGGGAAGACGAGATAGTTTAACGGCAAACCTAACCTTAGCAAATCAAGCTCTTCCAGGTCCCAATTTCAATCTCACTCGACTTAAATCTGTATTTAATGATCAAGGCCTCAACACTACTGATCTAGTTGCACTTTCAGGTTCTCATACATTTGGCAGAGGTCAATGTAGATTTTTCAGTGACAGGTTATACAATTTCAGCGGCACTGGTAAACCTGATCCAAGTCTCAACACAACCTACTTACAAACACTACAAGCAATATGCCCTAATGGTGGAGTTGGTACCACCCTCACCAATTTGGACCCAGTCACTCCCGATATCTTTGATTCCAAATACTTCTCCAATCTCCAGGCTGGTAAGGGCTTGTTTGGGAGTGACCAAGTGCTATTTTCCACAAGTGGTGCTGATACCATTCCTATTGTCAACAGATTCAGTAGTAACCAAACTCTTTTCTTTGAAAACTTCAAGGCATCAATGATAAAAATGGGTAATATTAGAGTTCTAACGGGATCTCAAGGAGAAATAAGAAAGCAATGTAACTTTGTTAATGGAAATTCTGCTGGACTGGCTACTCTGGCCACCAAGGAATCATCAGAGGACGTTAGCAGCAACAACAACCTCCCTCTTCTCCTCTGTCTCTTCTTCTCAAAAACCCTAAAACACTTCACACACTTTCCATATTCTCTGCTTCGCTATTCGTATCGCAACTCTTCAATCATGCCCGCCAGGAACCGTAAGAAGAAGGACCACGATCCCTTCTTCGGTAACGAATCCAGAAAACGCCGCAAAGTCGATGACGACGAAGACGCCGAGATAGAAAGCGACTCCGACGTAGATGGCTTCTTCGACGGTGAAGACGAGCATCCCGAAGAAGAGGAAGAAGAAGAAACCGGGGCGGAAGCGAGGAATAGAATCGCGCAGGACTATTTGCGAATGGTTCGGGAAATCGCAAAGAAAGAGAAGGAACAACATGAAGAAGGAGAAGGAGAGGATGAAGACGAAGAAGAAGGAGCAAGAGACTCCCTCGTAGCTCAGAGATTGATAAAGGAACAGCAAGAGGAGAGTGGACGCGTCAGAAGAACTATTGCTTCGAGGGTGGAATTAGGTGGTGAGTTTAGAGTGTTGGTGAAGCACCGGCATTGTGTCACTGCGGTGGCTCTGTCTGAGGATGATTCAAAGGGCTTTTCGGCTTCCAAAGATGGGACCATTATGCAGTGGGATGTGAATAGTGGGAAATGTGAGAGGTATAAGTGGCCCAGTGAATCGGTACTCAAGTCTCATGGCTTGAAGGAACCGCAAGGTTCTGCTACGAGGCAAAGTAAACATGTGTTGGCTTTGGATGTGAGTTCGGATGGTCGATATTTGGCAACTGGAGGACTTGATCGTCATGTTCATATATGGGATACCCGCACCAGGGAGCATCTTCAGGCTTTTCCAGGTCATAGAGGGCCTGTTTCATGTCTGACTTTTAGGCAAGGAACTTCAGAGCTTTTTTCTGGTTCATTTGATCGAACAGTTAAGATATGGAATGTTGAAGACAGAACCTACATGAGCACTCTATTTGGTCACCAAAGTGAAGTATTAAGTATTGATTGCTTACGCAAAGAAAGGGTGCTAACCGCTGGACGTGATCGTAGCATGCAGTTGTTTAAGGTTCATGAAGAGTCACGTCTTGTATTTCGCGCTCCTGCATCTTCCTTAGAATGCTGTTGTTTTGTTAATAATGATGAATTTTTGTCTGGTTCGGATGATGGAAGCGTTGAGCTTTGGACTGTAATGCGAAAGAAGCCAATTTACATTTTGAAGAATGCTCATACTCTATTGAATCATACTAGCTTGAAACCTGACCAAAAGGGTAGTGAAAGACTCCCCAATGGCAACCTAGAAAATGGTCATCATCATCCCGAGAATCATGACTATTCATCAGTATTCTCTTGGGTCAGTGCAGTCACTGTTTGTAGAAATAGTGACCTTGCTGCATCTGGGGCCGGTAATGGTTCTGTTCGGTTATGGGCAATTGAAAGTGAGACCAAAGACATCAAATCTATTTATAATGTGCCACTGGTTGGGTTTGTGAATTCGTTGGCTTTTGCAAAATCTGGAGAATTCCTAGTTGCTGGAGTTGGGCAGGAACCTCGTCTAGGAAGGTGGGGACGAACCCCTGAAGCTCGGAACGGAGTTTCAATTCTTCCTCTCAAGGTGTTATAG 2652 0.4434 MSSLISHITALCCLVVVLIGALPFSSDAQLDPSFYRDTCPKVHSIVREVIRNVSKSDPRMLGSLMRLHFHDCFVQGCDASILLNTTATIVSEQTAFGNNNSIRGLDVVNQIKTAVENACPNTVSCADILALAAEISSVLANGPDWKVPLGRRDSLTANLTLANQALPGPNFNLTRLKSVFNDQGLNTTDLVALSGSHTFGRGQCRFFSDRLYNFSGTGKPDPSLNTTYLQTLQAICPNGGVGTTLTNLDPVTPDIFDSKYFSNLQAGKGLFGSDQVLFSTSGADTIPIVNRFSSNQTLFFENFKASMIKMGNIRVLTGSQGEIRKQCNFVNGNSAGLATLATKESSEDVSSNNNLPLLLCLFFSKTLKHFTHFPYSLLRYSYRNSSIMPARNRKKKDHDPFFGNESRKRRKVDDDEDAEIESDSDVDGFFDGEDEHPEEEEEEETGAEARNRIAQDYLRMVREIAKKEKEQHEEGEGEDEDEEEGARDSLVAQRLIKEQQEESGRVRRTIASRVELGGEFRVLVKHRHCVTAVALSEDDSKGFSASKDGTIMQWDVNSGKCERYKWPSESVLKSHGLKEPQGSATRQSKHVLALDVSSDGRYLATGGLDRHVHIWDTRTREHLQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNVEDRTYMSTLFGHQSEVLSIDCLRKERVLTAGRDRSMQLFKVHEESRLVFRAPASSLECCCFVNNDEFLSGSDDGSVELWTVMRKKPIYILKNAHTLLNHTSLKPDQKGSERLPNGNLENGHHHPENHDYSSVFSWVSAVTVCRNSDLAASGAGNGSVRLWAIESETKDIKSIYNVPLVGFVNSLAFAKSGEFLVAGVGQEPRLGRWGRTPEARNGVSILPLKVL. 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04223 883 CDD WD40 521 855 - -
Seca6g04223 883 PRINTS G protein beta WD-40 repeat signature 603 617 IPR020472 -
Seca6g04223 883 PRINTS G protein beta WD-40 repeat signature 726 740 IPR020472 -
Seca6g04223 883 PRINTS G protein beta WD-40 repeat signature 645 659 IPR020472 -
Seca6g04223 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 625 IPR001680 GO:0005515
Seca6g04223 883 ProSitePatterns Trp-Asp (WD) repeats signature. 603 617 IPR019775 -
Seca6g04223 883 Gene3D Peroxidase, domain 2 167 310 - -
Seca6g04223 883 PANTHER U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 389 881 - -
Seca6g04223 883 Pfam Peroxidase 46 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 ProSitePatterns Trp-Asp (WD) repeats signature. 645 659 IPR019775 -
Seca6g04223 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 626 667 IPR001680 GO:0005515
Seca6g04223 883 MobiDBLite consensus disorder prediction 467 487 - -
Seca6g04223 883 CDD secretory_peroxidase 29 330 IPR033905 GO:0004601|GO:0042744
Seca6g04223 883 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 SMART WD40_4 577 616 IPR001680 GO:0005515
Seca6g04223 883 SMART WD40_4 619 658 IPR001680 GO:0005515
Seca6g04223 883 SMART WD40_4 516 555 IPR001680 GO:0005515
Seca6g04223 883 SMART WD40_4 701 739 IPR001680 GO:0005515
Seca6g04223 883 SMART WD40_4 785 820 IPR001680 GO:0005515
Seca6g04223 883 SMART WD40_4 661 699 IPR001680 GO:0005515
Seca6g04223 883 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 MobiDBLite consensus disorder prediction 759 782 - -
Seca6g04223 883 MobiDBLite consensus disorder prediction 417 445 - -
Seca6g04223 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 626 660 - -
Seca6g04223 883 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Seca6g04223 883 ProSiteProfiles Plant heme peroxidase family profile. 29 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 MobiDBLite consensus disorder prediction 390 450 - -
Seca6g04223 883 SUPERFAMILY WD40 repeat-like 520 865 IPR036322 GO:0005515
Seca6g04223 883 Pfam WD domain, G-beta repeat 708 738 IPR001680 GO:0005515
Seca6g04223 883 Pfam WD domain, G-beta repeat 781 819 IPR001680 GO:0005515
Seca6g04223 883 Pfam WD domain, G-beta repeat 589 616 IPR001680 GO:0005515
Seca6g04223 883 Pfam WD domain, G-beta repeat 521 555 IPR001680 GO:0005515
Seca6g04223 883 Pfam WD domain, G-beta repeat 621 658 IPR001680 GO:0005515
Seca6g04223 883 FunFam Peroxidase 33 177 - -
Seca6g04223 883 FunFam Peroxidase 167 310 - -
Seca6g04223 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 523 560 - -
Seca6g04223 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 523 564 IPR001680 GO:0005515
Seca6g04223 883 Gene3D - 517 883 IPR015943 GO:0005515
Seca6g04223 883 Gene3D - 34 331 - -
Seca6g04223 883 SUPERFAMILY Heme-dependent peroxidases 29 331 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca6g04223 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Seca6g04223 883 MobiDBLite consensus disorder prediction 390 416 - -
Seca6g04223 883 FunFam U3 snoRNP-associated protein-like EMB2271 517 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04223 Seca-Chr6 109996070 110007636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04223 15 335 Peroxidase AT5G06730 58.879 4.93e-128 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04223 K14793 - gmx:100816732 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04223 6 109996070 110007636 Seca6g04223 6 109996070 110007636 ECH