Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04216 ATGGCACTTTCTATGCACAAGGACTCATCCAACAATCAGATGGATTCTAGCAAGTATGTGAGGTATACACCTGAACAAGTAGAGGCTTTGGAGAGGGTCTATGCAGAATGTCCAAAGCCCAGTTCTTTGAGAAGGCAGCAGCTTATCAGGGAGTGCCCCATCCTCTCTAACATTGAACCCAAACAAATCAAAGTTTGGTTTCAAAATCGCAGATGTCGAGAGAAGCAGAGAAAGGAAGCTTCTCGTCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAACTGTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTCTCACATCTGGTTTATGAAAATGGATACATGAAGAACCAGATACAGACTGCTTCTGCTGCTACCACCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAACCAACAGCAAAACCCAACTCAGCATCCCCAGAGGGATGCAAACAACCCAGCTGGTCTTCTCGCCATTGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACAAAGGTTGCCGAGATTCTTAAAGATAGAACATCGTGGTATCGTGACTGTCGATGCCTTGATGTCTTGAGTATAGTCCCCACTGGAAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCGCCTACAACATTGGCAGCAGCAAGGGACTTTTGGACACTAAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCTTTGACTTCTTCAACTGGTGGTCCCACAGGGCCTCCTCCTTCAAACTTTGTTAGAGCTGAAATGCTTCCTAGTGGTTATCTAATTAGACCTTGTGAGGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGATGTCTGGAGTGTTCCTGAAGTGCTGAGGCCCCTCTATGAATCATCAAAAATCTTGGCTCAGAAATTGACTATTGCTGCCTTGCAACATATAAGACAAATAGCACAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAACCTGCTGTCTTGAGGACATTTAGTCAGAGACTTTGCAGGGGATTTAATGATGCTGTGAATGGGTTTGTGGATGATGGTTGGTCACTGATGGGTAATGATGGAGTGGAAGATGTGACAATAGCCATAAACTCATCTCCCAACAAGTTTTTGGGGTCCAATTACAATTCCTCAATGTTCCCAGCATTTGGAGGTGGGGTCCTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAGCATCGGTCAGAGTGGGCTGATTATGGGGTTGATGCCTACTCTGCTGCATGTCTTAAGGCTAGTCCCTATGCAGTTCCTTGTGCAAGGCCTGGTGGTTTCCCCAGCAGCCAAGTCATTTTACCCCTTGCCCATACTATTGAGCATGAGGAGTTCCTGGAGGTAGTTCGTATAGAGGGCCATGCATTTTCGCCTGAAGATGTGGCATTGGCACGTGATATGTATCTATTGCAGCTGTGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGATGAATCATTTGCGGATGATGCTCTTCTACTGCCTTCTGGTTTTCGCGTCATTCCTTTGGATCCTAAATCAGTTGAGTGGCATTTCTCAATTACTTCTTTGGATGGTCCAGCTGCAACAAGGACATTGGATTTGGCATCGACCCTTGAAGTGGGATCTGGGAATGCTCGTTCAGCTGGTGAAACTGATGCAAATGGTTACAACCTCAGGTCGGTCCTCACTATTGCATTCCAATTTACCTTTGAGAACCATATGCGAGACAATGTGGCTGCTATGGCTCGCCAGTATGTGCGTAGTGTTGTGGGATCTGTTCAGAGGGTTGCCATGGCTATTGCTCCTTCTCGCCTCAGCACCCAGATGGCGCCAAAGTCACTTCCTGGTTCACCAGAGGCTCTTACTTTAGCAAGATGGATTTGTAGAAGCTACAGGATGCACACTGGTGCAGAGCTTTTTAGAGTTGAGTCCACAGCTGGAGATGCAGTCTTGAAGCAACTTTGGCACCATTCAGATGCAATCATGTGCTGTACTGTAAAAACAAATGCATCTCCAGTGTTCACCTTTGCAAACCAGGCTGGGTTAGACTTGCTTGAAACTACTCTGGTTGCACTTCAAGATATAATGCTTGACAAAGTTCTTGATGAATCTGGCAGGAAGATTCTTTGCACTGAGTTCTCCAAGATAATGCAACAGGGATTTGCATATCTGCCTGCAGGGATATGTGTATCCAGTATGAATAGGCCAGTGTCCTATGAGCAGGCCATTGCATGGAAGGTTCTCAACGATGATGATTCTAATCACTGCCTAGCTTTCATGTTCATGAACTGGTCTTTTGTTTGA 2568 0.4622 MALSMHKDSSNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKNQIQTASAATTTDNSCESVVMSGQNQQQNPTQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRTSWYRDCRCLDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPPSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFLGSNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSVEWHFSITSLDGPAATRTLDLASTLEVGSGNARSAGETDANGYNLRSVLTIAFQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQMAPKSLPGSPEALTLARWICRSYRMHTGAELFRVESTAGDAVLKQLWHHSDAIMCCTVKTNASPVFTFANQAGLDLLETTLVALQDIMLDKVLDESGRKILCTEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV. 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04216 855 Pfam MEKHLA domain 710 854 IPR013978 -
Seca6g04216 855 Gene3D - 199 382 IPR023393 -
Seca6g04216 855 MobiDBLite consensus disorder prediction 1 20 - -
Seca6g04216 855 FunFam homeobox-leucine zipper protein ATHB-15 201 382 - -
Seca6g04216 855 ProSiteProfiles START domain profile. 156 357 IPR002913 GO:0008289
Seca6g04216 855 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Seca6g04216 855 SUPERFAMILY Bet v1-like 166 377 - -
Seca6g04216 855 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Seca6g04216 855 CDD homeodomain 18 78 IPR001356 GO:0003677
Seca6g04216 855 MobiDBLite consensus disorder prediction 137 158 - -
Seca6g04216 855 Coils Coil 87 107 - -
Seca6g04216 855 SUPERFAMILY Bet v1-like 413 606 - -
Seca6g04216 855 CDD bZIP 70 109 - -
Seca6g04216 855 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Seca6g04216 855 SMART START_1 165 375 IPR002913 GO:0008289
Seca6g04216 855 SMART HOX_1 15 81 IPR001356 GO:0003677
Seca6g04216 855 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 855 IPR044830 GO:0003700
Seca6g04216 855 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Seca6g04216 855 CDD START_ArGLABRA2_like 160 376 - -
Seca6g04216 855 Pfam START domain 166 373 IPR002913 GO:0008289
Seca6g04216 855 MobiDBLite consensus disorder prediction 137 157 - -
Seca6g04216 855 Gene3D - 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04216 Seca-Chr6 109907405 109913648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04216 5 855 Homeobox Transcription Factor Family AT2G34710 79.040 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca6g04216 START 2.9e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04216 K09338 - gmx:100807428 1592.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04216 6 109907405 109913648 Seca6g04216 6 109907405 109913648 ECH