Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04215 ATGACCTTATGTGACTATGGCTATTGGTTCTCATGGGCTATCTCAACAGGGGCTATCACAAAGAGGATGACAGATATTGAAGAGATGGCAGGCATGGATGTGCTTTGTAGTGATAAGACTGGGACCTTCACATTTAATCAAAGACAAAGAGGAAATGAAATAAAAAGGGTTTTGACTCGTGGAGGAAGATCCGTCCAATACAATGTGTACGAAACCTTGTTTGGGGTCTCTTCCAAATACGTTCCTCCCAATCGCCCTATCGGTAGAGGCGCTTATGGCTTCGTCTGTTCTGCTGTTAATTCAAATACACACAAAGAAGTTTCCATCAAGAAGATTGGTAACGCATATGACAACATCATTGATGCTGAAAGGACTCTTAGGGAAATTAAACTGCTTCGCCACTTGGACCATGAAAATGATACTGATCTCAAGCTCTTAGTGGATCTCTTGGAAAAGGTAAGAGACTTTTCAAAACTAAGGGATATAGAAATTCTTTGCCAGGCTACACATTTGGAGAATGAACATGTGGTTGAGATTAGGAAGGGGGGCAAGGTAAAATATGAACTGGACAAAAAATCTAGACTTATTAAGGTTGAACGTGTACTTTACTCATTAGTTGTGTATCCCCACAACTATGGGTTTATCCCATCCCATGTACTATTTGTGAGAACATTGATCCCATGGGTGTCTTAG 693 0.4069 MTLCDYGYWFSWAISTGAITKRMTDIEEMAGMDVLCSDKTGTFTFNQRQRGNEIKRVLTRGGRSVQYNVYETLFGVSSKYVPPNRPIGRGAYGFVCSAVNSNTHKEVSIKKIGNAYDNIIDAERTLREIKLLRHLDHENDTDLKLLVDLLEKVRDFSKLRDIEILCQATHLENEHVVEIRKGGKVKYELDKKSRLIKVERVLYSLVVYPHNYGFIPSHVLFVRTLIPWVS. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04215 230 Gene3D - 16 32 - -
Seca6g04215 230 PANTHER INORGANIC PYROPHOSPHATASE 143 217 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Seca6g04215 230 Gene3D Inorganic pyrophosphatase 163 220 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Seca6g04215 230 SUPERFAMILY Protein kinase-like (PK-like) 85 147 IPR011009 -
Seca6g04215 230 Gene3D - 48 62 IPR023299 GO:0000166
Seca6g04215 230 FunFam Mitogen-activated protein kinase 66 164 - -
Seca6g04215 230 Pfam Inorganic pyrophosphatase 176 217 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Seca6g04215 230 ProSitePatterns Protein kinases ATP-binding region signature. 87 111 IPR017441 GO:0005524
Seca6g04215 230 Gene3D Phosphorylase Kinase; domain 1 84 162 - -
Seca6g04215 230 Pfam Protein kinase domain 85 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04215 230 Pfam EB1-like C-terminal motif 151 179 IPR004953 GO:0008017
Seca6g04215 230 SUPERFAMILY Inorganic pyrophosphatase 154 218 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Seca6g04215 230 Gene3D - 33 47 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04215 Seca-Chr6 109899661 109901333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04215 54 139 MAP Kinase Gene Family AT4G11330 74.419 2.04e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca6g04215 Pkinase 2.7e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04215 - - qsu:112002250 152.91