Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04214 ATGACATATCCCGCTCATGATCCCACAGATAATGAAGCTGATGGACAGCAACAATCAGAACCACGGGTGCATACTTTATTAGAAAATGACATTTCTCATGCAGATACTGGCACTCATAATGTTCAGTATGAAACACCTCCACAGCTTGGAAGTGGGCATGCTATGGCACCCCCTGCTTACCCATATCCATATCCATACTACAGAAACATCTTTGTTCCCTGTTATGCACAACTTTATCCCCCACAACTCTATGGTGGACATCCAATGGTCCATTTTCAGTTAATGGGAGTTCAACAAGCAGGTGTTCCTTTACCAACTGGTGTAGCTGAGAAGCCTGTGTTTGTTAATGCAAAACAATATCATGGTATATTAAGACGCAGGCAGTCCCGTGCTAAAGCTGAATTAAAAAATAAAGCTTCAAGGAATAAGAAGCCATACTTGCATGAATCTCGACATAAAGCAAGAGGATGTGGAGGCCGGTTTCTGAATTCAAAGAAAAGTGAGAATGAACAGGAAGAGGTTGCATCAACTGACAAATCACAATCCAATATAAATCTCAATTCTGATAAAAATGATCTTGCGCCATCAGATAAAACATCCTAA 603 0.4063 MTYPAHDPTDNEADGQQQSEPRVHTLLENDISHADTGTHNVQYETPPQLGSGHAMAPPAYPYPYPYYRNIFVPCYAQLYPPQLYGGHPMVHFQLMGVQQAGVPLPTGVAEKPVFVNAKQYHGILRRRQSRAKAELKNKASRNKKPYLHESRHKARGCGGRFLNSKKSENEQEEVASTDKSQSNINLNSDKNDLAPSDKTS. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04214 200 MobiDBLite consensus disorder prediction 125 200 - -
Seca6g04214 200 ProSiteProfiles NF-YA/HAP2 family profile. 109 164 IPR001289 GO:0003700|GO:0006355
Seca6g04214 200 MobiDBLite consensus disorder prediction 127 144 - -
Seca6g04214 200 SMART cbf3 108 164 IPR001289 GO:0003700|GO:0006355
Seca6g04214 200 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 27 192 IPR001289 GO:0003700|GO:0006355
Seca6g04214 200 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 161 IPR001289 GO:0003700|GO:0006355
Seca6g04214 200 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Seca6g04214 200 Gene3D - 109 165 - -
Seca6g04214 200 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Seca6g04214 200 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Seca6g04214 200 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04214 Seca-Chr6 109876364 109878366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04214 1 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 47.596 1.90e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca6g04214 CBFB_NFYA 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04214 K08064 - gmx:100809036 303.523