Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04210 ATGTCAATGAATAATTACCGAATGGATCTTGGGAGGCCTGCCTCAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAGAGCGATAATCGTTTTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATCTCGAAGGTTTTGTCTGTGACGTTGGATGAATGGTCAGATGATGAAGTAGATGCAATGATTGAAGTTGGGGGGAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCTGAAGGATATACAAAACCCGGACCAGATGCCAGCCATGAGCAGCGTGCAAAGTTTATACGGTCAAAATATGAGTTACAAGAATTTTTGAAACCTAGTTTGCGCATTGTATCTGGAAAAAGCAATCTATCAAGTTCTTCCAAAAGTTTCATGGACAGTTTTAAAAGTACAAGTTCACAGAGAATGGAAGGTATGGTAGAATTTATTGGAATTGTGAAGGTGAAAGTGATTCAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTATTTTGAACCTCGGCCAACAGACTGTCCAGACAACTGTAGTGAGGAGTAACTTGAATCCCGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGCATTATGGACAGCTGAAATTGGTATGA 711 0.3966 MSMNNYRMDLGRPASGRRRLKDLLLQSDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYIPEGYTKPGPDASHEQRAKFIRSKYELQEFLKPSLRIVSGKSNLSSSSKSFMDSFKSTSSQRMEGMVEFIGIVKVKVIQGTNLAIRDIKSSDPYVILNLGQQTVQTTVVRSNLNPVWNEEHMLSVPEHYGQLKLV. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04210 236 CDD ArfGap 20 126 - -
Seca6g04210 236 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Seca6g04210 236 FunFam Arf-GAP with dual PH domain-containing protein 1 12 140 - -
Seca6g04210 236 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Seca6g04210 236 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 168 229 IPR035892 -
Seca6g04210 236 Gene3D C2 domain 153 236 IPR035892 -
Seca6g04210 236 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 235 IPR044518 GO:0005096|GO:0005543
Seca6g04210 236 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Seca6g04210 236 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Seca6g04210 236 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Seca6g04210 236 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Seca6g04210 236 ProSiteProfiles C2 domain profile. 154 236 IPR000008 -
Seca6g04210 236 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Seca6g04210 236 Gene3D Arf GTPase activating protein 6 138 IPR038508 -
Seca6g04210 236 Pfam C2 domain 172 234 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04210 Seca-Chr6 109851918 109856635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04210 3 235 C2H2 Transcription Factor Family AT4G05330 71.193 1.26e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04210 K12486 - gmx:100810806 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04210 6 109851918 109856635 Seca6g04210 6 109851918 109856635 ECH