Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04209 ATGGCTAACTACTACTCCCACCCTCATATCTGTCAATGCCTTAGTCAATTGATAACCTACCGGCGACACTTTCCGGTGATGATCGCCGGCCACCGCCGCAAGACTGGTCAACAGTTTGTGGAGGAAGTATTGTCCCTGGCACGAGGCCTTCTCCAGCTAGGAGTCACACCCGGTGATGTGGTTGCCATCTCTGCTTACAACAGTGATTGGTATCTGGAGTGGTTGTTAGCCATTGCATTTGTTGGAGGAATAGTTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAAATTAGCAATGACTGCTGTGAGGCCAGTGATGTTAGTGATTGATGAGAGCTGCTATGAATGGTACTTAAAACTCCAACAAAATGATATTCCATCTCTGAGGTGGCATGTTTTGTTGGATTCCCCTTCCTCAGATTTTACAAAGAAGTGGAATGTGTTAACTCCAGAAATGCTCAAGAAGCATCATGTCAAATCTCTAGAATTTAATTACTCATGGGCACCTGAAGGCGCTGTCATAATATGCTTTACTTCAGGAACTACAGGAAAGCCCAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCATACAATCCCTAGCCAAGATTTCCATAGTTGGGTACAGTGAGGATGATGTCTATCTCCATACTGCTCCATTATGCCATATTGGGGGCTTGTCATCAGCCATGACCATGCTTATGGTTGGAGGTTGCCATGTATTTATGCCAAAGTTTGATGCAAAATCAACTGTAGCTGCCATTGAGCAATATAATGTGACATCTTTTATCACTGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAGTTAGGCACAAAGAAACCTGGAAAGGGGGAGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTCATCAAAGACACTAGCATATTCTTCCATAAAGCTAAGCTTATTTCAGCTTATGGGATGACAGAGGCATGCTCTTCATTGACATTCCTGACACTCTATGACCCAATGCACAAAACCACTAGCCAGCCCCTTCAAAAATATGGTGAGGCAAGACCCAATCTCATTCATCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCCCATGTAGAATTGAAAATATGTGCAGATGCCTCTAGTCACATTGGGAGAATTTTAACTAGAGGACCACATTTAATGCTCAAGTATTGGGATCAAATCCTCACAAACCCATTAAATCAGAGGAATGAAGTGTGGCTTGACACAGGTGACATTGGATCAATTGATTCAAATGGTAATTTGTGGCTCCTTGGAAGAACAAACGGCCGTATCAAGAGTGGTGGAGAGAACATTTACCCTGAAGAGGTAATAAAAATGACACTAAAACATGTTTGGTGTTTGCTTGATCCAGGAGTGCATCATTTCTTCTTTCTATTGAACATTGAATGCTTGTCTTTACTTAGTTTATGA 1458 0.4307 MANYYSHPHICQCLSQLITYRRHFPVMIAGHRRKTGQQFVEEVLSLARGLLQLGVTPGDVVAISAYNSDWYLEWLLAIAFVGGIVAPLNYRWSFEEAKLAMTAVRPVMLVIDESCYEWYLKLQQNDIPSLRWHVLLDSPSSDFTKKWNVLTPEMLKKHHVKSLEFNYSWAPEGAVIICFTSGTTGKPKGVTLSHGALIIQSLAKISIVGYSEDDVYLHTAPLCHIGGLSSAMTMLMVGGCHVFMPKFDAKSTVAAIEQYNVTSFITVPAIMASLISVVRHKETWKGGETVKKILNGGGSLSLELIKDTSIFFHKAKLISAYGMTEACSSLTFLTLYDPMHKTTSQPLQKYGEARPNLIHQPQGVCVGKAAPHVELKICADASSHIGRILTRGPHLMLKYWDQILTNPLNQRNEVWLDTGDIGSIDSNGNLWLLGRTNGRIKSGGENIYPEEVIKMTLKHVWCLLDPGVHHFFFLLNIECLSLLSL. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04209 485 Gene3D - 3 437 IPR042099 -
Seca6g04209 485 Pfam AMP-binding enzyme 25 442 IPR000873 -
Seca6g04209 485 SUPERFAMILY Acetyl-CoA synthetase-like 9 452 - -
Seca6g04209 485 ProSitePatterns Putative AMP-binding domain signature. 177 188 IPR020845 -
Seca6g04209 485 PANTHER ACYL-COA SYNTHETASE 31 459 - -
Seca6g04209 485 CDD AFD_class_I 177 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04209 Seca-Chr6 109841822 109847884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04209 46 459 Monolignol Biosynthesis Gene Families AT3G21240 29.009 1.20e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04209 K14760 - gmx:100809925 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04209 6 109841822 109847884 Seca6g04209 6 109841822 109847884 ECH