Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04198 ATGGGAAGTGCTGCTCCTTCTTCTTCTGCTCTTCCACCACTACCACCACGTCCTCCTAATAAGAATAATCCAACCATTGGTTCATCAAGTGGTGCAAAAAAGAATAATCCAGCTGCAGGTATTGGTTCATCGAGTGGTACTGCAGCTGTTGCTCAAGATGCAAATGTGTTGCCAACACTACCTCCAGCTGTACCGAGAGCAAGGACAGAAGCGCATAAAGCGAGATTGTTAGAGACTGCACGAGCTGCTAAGGAAGAATTGGTTAAGCTTATGTGGACGAATGAGCCTTTATGGATCAAGTCTTCTTCTGCTGATAAGAGGCTTGTTCTTGATCCTGAAAACTATCAAAAGTACTTCACTCGGGCTAATAACTTCACATTAGGCTGCAAATCTCGTGTTGAAACATCCAAAGATTCACGAATTGTGAAGATTCATGCCATCAAATTGGTTGACATGCTTTTAGATACGGTGAAATGGGGTTGTATTTTCTCAACAATTATTACAAATACGCAGTCAATGGAAGTGATTGAAGTAGGTTCCCCACAAAACCGAAGTGGATCTTTGCAAATGATATATGAAGAGATGCACGTTCTTTCACCTTTAGTGCCACATCGGGAATTCTACTTGATTCGCTACTGTGAACAAGTTAAAGCTGGTATATGGGTGATAGTGAATGTATCTTTTGATCCCAAGAAGGAAGGACATCATGCTTCTACTCGTAGGTTTCCCTCTGGATGCCTCATTCACCAAATCTCTGATACCTCTTCCGAGGTAATTTGGGTTGAGCATGTGGAAGTGGACGCGAAGGTGGAAACGCACAAGATGTACAGAGAGGTTGTTAACAACGGTTTTGCATATGGAGCAGAAAGATGGCTTATGGAACTTGAAAGAACGTCTGAAAGAATAAATTGCGTTGCAGCTGGATACATACCTATGTATGACACCGGTGGTGCGGTGGCTTCACCTGATGGAAGGAAGAGTGTGATGAGGCTTTCTCATAAAATGGTACGGAAGTTTTGTGGAAGTTTGATCATGACAAGTAAGGTGAAGTTCCCAGCACATTTTGATGAGGAGGCGGGGGAGCATTGCACTGGAGTTAGGACCACTATTCGTAAAAACCAAGACCCAAACTTGCCAAATGACATTGTTATTATTACTGTTTCTACCTCCTTTTGGCTCCCCATCCCTTCTCAGAATCTTTTCAACTTCTTTAAAGATCCTCTCAAACGTCCTCAGTGGGATGCTCTCTGCGATGGTAATGGAGTGATTGAGATAGCACACATCGCAAATGGAACTCATCCTAACAACTATATATCCATTATGCAGCCTATGCGTGTTGGCCTGAACGATGTGGTGATTCTTCAAGAAAGTTTTATAGATCCGTTGGGAGCTTACGTGGTGTATTCTCCAATTAATATGACAGATCTAAAGACGGCTGCAACTGGAGGAGATTCATCAGCGATATCAGTTCTTCCATCAGGCATTACCATCTCAGAGGACAGACTATCCTCCTCCTCCATTATGAATATTGATGTTACTGGAAAGGGAAAAGCCGTTGTTGGTAGTAGCAGTACAAGAGGTTCACTCTCCTCTATCTCTTTCCAGATACTCATGTCTGCTTCAGCTTCTGAGAATCCGGACTCTATGCCTGCTGTTACTTCACTTATAACCTCAACGATCCAAAACATCAAGGAGGCTTTGATTTGA 1707 0.4294 MGSAAPSSSALPPLPPRPPNKNNPTIGSSSGAKKNNPAAGIGSSSGTAAVAQDANVLPTLPPAVPRARTEAHKARLLETARAAKEELVKLMWTNEPLWIKSSSADKRLVLDPENYQKYFTRANNFTLGCKSRVETSKDSRIVKIHAIKLVDMLLDTVKWGCIFSTIITNTQSMEVIEVGSPQNRSGSLQMIYEEMHVLSPLVPHREFYLIRYCEQVKAGIWVIVNVSFDPKKEGHHASTRRFPSGCLIHQISDTSSEVIWVEHVEVDAKVETHKMYREVVNNGFAYGAERWLMELERTSERINCVAAGYIPMYDTGGAVASPDGRKSVMRLSHKMVRKFCGSLIMTSKVKFPAHFDEEAGEHCTGVRTTIRKNQDPNLPNDIVIITVSTSFWLPIPSQNLFNFFKDPLKRPQWDALCDGNGVIEIAHIANGTHPNNYISIMQPMRVGLNDVVILQESFIDPLGAYVVYSPINMTDLKTAATGGDSSAISVLPSGITISEDRLSSSSIMNIDVTGKGKAVVGSSSTRGSLSSISFQILMSASASENPDSMPAVTSLITSTIQNIKEALI. 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04198 568 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 49 567 IPR042160 -
Seca6g04198 568 SMART START_1 78 301 IPR002913 GO:0008289
Seca6g04198 568 ProSiteProfiles START domain profile. 69 304 IPR002913 GO:0008289
Seca6g04198 568 Pfam START domain 80 300 IPR002913 GO:0008289
Seca6g04198 568 SUPERFAMILY Bet v1-like 365 500 - -
Seca6g04198 568 SUPERFAMILY Bet v1-like 71 302 - -
Seca6g04198 568 Coils Coil 66 86 - -
Seca6g04198 568 MobiDBLite consensus disorder prediction 23 46 - -
Seca6g04198 568 CDD START_ArGLABRA2_like 73 300 - -
Seca6g04198 568 MobiDBLite consensus disorder prediction 1 46 - -
Seca6g04198 568 Gene3D - 129 297 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04198 Seca-Chr6 109737288 109739598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04198 80 567 Homeobox Transcription Factor Family AT1G73360 40.733 1.57e-119 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04198 K09338 - gmx:100794552 484.567