Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04196 ATGCCCATACCCAAACAAAGCTCAACAACGTCAATTGGCTATGAGGTTGGAATTGAACCCAAACAAATTAAGTTTTGGTTTCAGAACAAAATGACTAAAATAAAGATTCAAAGCAAGCCAGCAAATAACACTACTCTTCGAGTTAAGAAGGATATGATGCTTAATGAAAACCTCCAAATGAAAGAGGTATTAGAGAATATAATTTGCCAAGATTGTGGGGGTCCACCGTTACTTGAAGAAGAGCATGAAAGTTTCATGCGAAAAATGCAACTTGAAAATAGAAGGCTAAAAGAAGAGCATGGGAAGGTGTCTAACCTTATTGCAAGGTACTTAGAGAAATATATGTCAACACCTAGGTTGAAGCAAGTTCCTATCCCTATCACTGAATCTTCTTCACATGAGCCTGCACTCGATGGAAGTTCAAGTACATCTCTTGATCCAAATCTTGGTTTTCACAACCCAATGGAATTTTCTAATATGGAAAAGGCATTGATGTATGAGATTGCAACTTCTGCAATGGAAGAACTAATTAAGCTTTTGCGCATTAATGAGCCTTTTTGGGTCAACTCATCAGCTCAAGATGGGGAACTCACCCTTCATCGTGAAACTTATGAAAAAAATTTCCCGCAGACTAATCACTTGAAAGGTGAAAATGTGCATCTAGAATCATCGAAAGATTCAGGAGTAATGAATATTAGCATAAAGGAATTGGTTGATATATTTTTAGATGCGTGCGGCCTTGTGAATTTTATTTTCTTCGCTGGGGTGTGGGTGATAACAGATATGTCTTATGACTCTTTTCGAGTCAACTCCCCTCTTTATCGCTCTTGGAGATACCCTTCTGGATGCATGATTCGTGAAATCTCTAATAGGTGTTGTGAGCTTATATGGGTTGAGCATGTGGAAGTGGATGATGAGATTCATACCCACCAACTATATAGAGATCTTGTTGGCGTCAATATTGCTTATGGAGCAGGAAGATGGATATTGGAACTTCAAAGAATGTGCGGGAGATTTGCTTCCTTTCGTGTTAAAAAGATACCTGATCAAAACTTTGGAGGAGTGATTGATTCACTTGAAGGGAGGAAAGGTGTAATGAATTCTTCTCATCAAATGGTTAAGACATTCTGTGAAAGTCTAACCATGTCAGGTCATGAGCCCGACTTCCCACATTTAACTATAGGAAATAATAATGGAGTTAGAATCAACGCTCGCAAAAGCATGGGTATAGGCCAACCAAATGGAACAATCGTTATGGCTTCTACCTCCATTTGGCTTCCTTTCCATTATGAGAAAGTTTTTGAGTTTCTCATAGATCACAAAAGACAAGCTCAGTGGGATGTTATTGCTCGTGGAAATCCAATGCATTTGGTTGCACACATTTCAAATGGAATTCATCTTGGCAACTGTTTTGTCATCTCTCCAAATGGCCAACCAAAAGAAACTTTGGGAGCAATTAACAGTGATAATGTCGATAGATCAAGAGACTCATTATTGATCGTGCTTTTCCAGGTATTGACTAGTAGTCCAGATGAAAGCGAACTGCTAAATATGGAATTTGTTACAACTCTCAACACCCTTTTAACCTCAACAATTGAAAAAGTGAAGCAAGCTCTAAACTTTAATAGTGTGAAATAG 1638 0.3828 MPIPKQSSTTSIGYEVGIEPKQIKFWFQNKMTKIKIQSKPANNTTLRVKKDMMLNENLQMKEVLENIICQDCGGPPLLEEEHESFMRKMQLENRRLKEEHGKVSNLIARYLEKYMSTPRLKQVPIPITESSSHEPALDGSSSTSLDPNLGFHNPMEFSNMEKALMYEIATSAMEELIKLLRINEPFWVNSSAQDGELTLHRETYEKNFPQTNHLKGENVHLESSKDSGVMNISIKELVDIFLDACGLVNFIFFAGVWVITDMSYDSFRVNSPLYRSWRYPSGCMIREISNRCCELIWVEHVEVDDEIHTHQLYRDLVGVNIAYGAGRWILELQRMCGRFASFRVKKIPDQNFGGVIDSLEGRKGVMNSSHQMVKTFCESLTMSGHEPDFPHLTIGNNNGVRINARKSMGIGQPNGTIVMASTSIWLPFHYEKVFEFLIDHKRQAQWDVIARGNPMHLVAHISNGIHLGNCFVISPNGQPKETLGAINSDNVDRSRDSLLIVLFQVLTSSPDESELLNMEFVTTLNTLLTSTIEKVKQALNFNSVK. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04196 545 Coils Coil 79 99 - -
Seca6g04196 545 ProSiteProfiles START domain profile. 255 341 IPR002913 GO:0008289
Seca6g04196 545 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 471 540 IPR042160 -
Seca6g04196 545 ProSiteProfiles 'Homeobox' domain profile. 1 37 IPR001356 GO:0003677
Seca6g04196 545 SUPERFAMILY Bet v1-like 394 476 - -
Seca6g04196 545 SUPERFAMILY Bet v1-like 166 336 - -
Seca6g04196 545 ProSiteProfiles START domain profile. 158 243 IPR002913 GO:0008289
Seca6g04196 545 Pfam START domain 254 336 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04196 Seca-Chr6 109707512 109710649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04196 2 473 Homeobox Transcription Factor Family AT1G73360 32.532 1.19e-93 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04196 K09338 - gmx:100795075 494.582