Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04182 ATGATTCTGCAATTTGCATTTCATGTGAATATCATCATTTTCATAATATGGTTGATATATCCACTGGCATCCGCACAAGGTTGGATTACATCACAACCTGGTTGTAATTCGTCATGTGGAACAATTGTTATCCCTTTCCCATTTGGAATGCAAGATCCGAAATGTTATGCAGATAAATGGTTTGAAATAGAATGCAGAAACAGTTCTTCTGAAGGTGAGAAGCCTTACTTGAAGTCTTTAAATCTTGAGGTGAGATATATTTATGTGAGCCTAGGCTTGATTGATGTCATGAATCCAATTACCCATTCGAATTGCCGAAGCAATAACAAAGACAAGGCAGGCATAACCTACTTGAGAGGAAGCCCTTTTGTATATTCCCAAGAGGAAAACACATTTGTGGCAGTTGGTTGCAACAATCTTGCTTTTCTACACTCAAATGGAACAACCGTTGGTGGTTGTGTGTCCATTTGTGACGATAATGAACAAGTGGACAATAGCTTTGATTTTGCAAGTGAGGGTTGCCATGGTAGGTACTGCTGCCAGACTTCACTGCCTATGCATCTTTCAGAGTTCAACGCCACACTTGAAGATCTAAGGAGTGAAAGTAGGAGGAATCATACAGAGGAGGAGGAGGAGTGTAGTTATATGATGATTGTAAGTGATTATTGGATCTCGTTCCAGAGCAACTATATGTCTTATTTGGAAGTGGAGAGATTTAGTGAGCTGAAGAACATGGATTATGTTCCTGCGGAGCTTGAGTGGGAGATTTTGAACGAGATGCTCATCAATTCCACTCTGAAACTCCCTTCAGAAGCTCACTGCTATAAGACCAATGTCACATCTTCACAAAATAGATACTCAGGTTGGAGATGTCAGTGCCCCACAGGCTACTATGGCAATCCTTACATCTCTCGAGGCTGCACCGCTATACCAGGGTTCTTCGATAAGAATAATCAGGCGAAGAAGTGGGCTATAGTAGGAGTTTTGTCAAGTCTCGGATCCATCATTTTGCTCTTTGGTCTATGGTTGTTATATAAAGTTGTAAGGAAAAGAATGATAAAAAAACGCAGAGAAAAGTTCTTCAAAAAAAATGGTGGACTGTTGTTACAACAAAGAATGACTTCAGGAGAAGTTAATGTGGACAGAGCTATTCTGTTCAGCCTAAAGGACTTAAAGAAGGCCACTGATAACTTTAATATGAACAGAGTTCTTGGAAAAGGAGGTCAAGGTACTGTTTATAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTCAAGGTTGAAGGCAAGATTGAAGAATTCATCAATGAGTTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCATTACTTGTTTATGAATTCATTCCCAATGGTAATCTTTTTGAATATTTGCATCACCAAAATGAGGACATACCAATGACATGGGATATGCGTTTGAGAATTGCAACAGAAATTGCAGGAGCTCTATTTTACTTACACTCTATTGCATCCCAACCCATTTATCATAGAGACATAAAATCAACAAATATACTGTTGGATGAAAAGTACAGGGCAAAATTAGCAGACTTTGGAGCATCCAGAATAATTTCCATTGAAGCTACTCATCTCACCACAGTAGTTCAAGGTACTTTTGGATACTTGGACCCTGAATATTTTCATACTAGTCAATTTACAGAAAAAAGTGATGTTTATAGCTTTGGTGTTGTTCTTGCTGAACTTTTAACTAGTCAGAGGCCAATATCCTCTGTAAGATCTGGGGAATCCAAGAATTTAGCTTCATATTTTGTTCAATGTTTGGAGGAGAATAGTTTGTTTGACATTATTGATAAAAGAATTATGAAGGAAGGGGAGAAAGAACATATCTTTGCAGTTGCCAATCTTGCAAATAGATGCTTAGAGTTAAATGGGAAAAAACGACCAACTATGAAAGAAGTGACATTGGAATTAGAAGGGATCCGAGGATTGAATAAGAAGTCTGATGTGCAGCAAGACCATGAAGAAATTGAGCTTGTTGAAATTGAAGACCACCAACCTTGGACTGGATATTCCACATCAAATTCATTGCCAGCTCTAAACAGTGGAACGTGGTCCTCAAACTCCAACTCGGAGGTTATACCTATTCTTACATTACAATAA 2187 0.3818 MILQFAFHVNIIIFIIWLIYPLASAQGWITSQPGCNSSCGTIVIPFPFGMQDPKCYADKWFEIECRNSSSEGEKPYLKSLNLEVRYIYVSLGLIDVMNPITHSNCRSNNKDKAGITYLRGSPFVYSQEENTFVAVGCNNLAFLHSNGTTVGGCVSICDDNEQVDNSFDFASEGCHGRYCCQTSLPMHLSEFNATLEDLRSESRRNHTEEEEECSYMMIVSDYWISFQSNYMSYLEVERFSELKNMDYVPAELEWEILNEMLINSTLKLPSEAHCYKTNVTSSQNRYSGWRCQCPTGYYGNPYISRGCTAIPGFFDKNNQAKKWAIVGVLSSLGSIILLFGLWLLYKVVRKRMIKKRREKFFKKNGGLLLQQRMTSGEVNVDRAILFSLKDLKKATDNFNMNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKIEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHHQNEDIPMTWDMRLRIATEIAGALFYLHSIASQPIYHRDIKSTNILLDEKYRAKLADFGASRIISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTSQRPISSVRSGESKNLASYFVQCLEENSLFDIIDKRIMKEGEKEHIFAVANLANRCLELNGKKRPTMKEVTLELEGIRGLNKKSDVQQDHEEIELVEIEDHQPWTGYSTSNSLPALNSGTWSSNSNSEVIPILTLQ. 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04182 728 SUPERFAMILY Protein kinase-like (PK-like) 384 664 IPR011009 -
Seca6g04182 728 Coils Coil 192 212 - -
Seca6g04182 728 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 677 IPR045274 GO:0007166
Seca6g04182 728 FunFam Wall-associated receptor kinase 2 472 689 - -
Seca6g04182 728 FunFam Wall-associated receptor kinase 2 368 471 - -
Seca6g04182 728 Pfam Protein kinase domain 399 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04182 728 Gene3D Transferase(Phosphotransferase) domain 1 472 694 - -
Seca6g04182 728 SMART serkin_6 398 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04182 728 Pfam Wall-associated receptor kinase galacturonan-binding 35 87 IPR025287 GO:0030247
Seca6g04182 728 Gene3D Phosphorylase Kinase; domain 1 364 471 - -
Seca6g04182 728 ProSiteProfiles Protein kinase domain profile. 398 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04182 728 CDD STKc_IRAK 404 669 - -
Seca6g04182 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04182 Seca-Chr6 109553638 109556619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04182 11 703 Receptor kinase-like Gene Family AT1G16260 42.778 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca6g04182 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04182 - - mtr:11415953 1004.2