Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04181 ATGGTTATGCAACTTGCATTTTACATAATCATTTTGATGATGTTAGGGTCCATATTTCCACTGGCATTAACACAAGATCCAATTACTGCACATCCCAATTGTGATTCAAGATGTGGAACTGTTGCAATACCTTTCCCGTTTGGAATGAATGATCCAAAATGCTATGCAGACAAATGGTTTGAAATAGAATGCAGAAACACTTCTCAAGGCCATCAAACACCGTACCTGAAATCTATAAATCTGGAAGTGAATTTAATTGATCCAACGGACAGCAAAATTCGGATCATGAATCCAGTTTTCCGTTGGAACTGCCAAAGCAACGATGCTCGACCAGTCGTAAACCTCAAAGGAAGCCCTTTCGTGTATTCCAAAGATGATAACAAATTCACTGCCATTGGTTGCAATAAGATCGCGTTTTTGCAATCAAATGGTTCTCAAGCTAGTGGCTGTGTGTCCGTTTGTGATGAGTACGACAACAATGAAGTTAGCAACGACATTGCGTTTGGAACCGATGGTTGCGTTGGCAGGTTCTGCTGTGAGACTTCATTGCCGTCGTTTCTTTCAGAATTTAATGTGACAGTTGAAGATCTAAGAAACAAAAGTGGGAGTAGTGAACAGTGCAGTTACGCGCTGATTGGGACGGAATATTGGTACCGAATACCGTTTGGGTCTTCTTTCGAGTATAGAAGTTTTCGTGACCTTGGTAATTTGGATTATGTTTCAGCGATGCTTGAGTGGGTGGTTCTTAACTCCTCTAACCTGAAACTCCCAATAGAGAGTGCCAATTGCACTGAAGTTGTATCCACAGAAAATAGACCCTTTGGTTGGAGATGTGAGTGCTACACAGGCTACAGTGGTGATCCCTACATTACGGGGGGATGTATAGCTATTGATGGTCCCTCTGATAAGAAAACTCGAGCTAAGTGGGCTATAGTAGGAGTTTCTGCAAGCCTTGGATCCGTCATTTTACTCCTTAGTATATGGTGGTTGTGTAAAGTGGTAGAGAAAAGAATGATACAGAAACGCAGGGAAAAATTCTTTAAACAAAATGGTGGTTTATTGTTACAACAAAGATTGTCTTCTAGTGAGGTTAATGTTGATAGAGTGAAACTGTTCAGCTTAAATGACCTAGAAAAAGCCACCAACCACTTCAATACAAACAGAGTAATTGGGAAAGGAGGCCAAGGTACTGTTTACAAAGGTATGTTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGCTTAAGGTAGAAGGGAAGGTTGAAGAATTCGTCAATGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGGTGCTGTTTGGAGGCAGAGATTCCTTTACTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATTTGCATGATCCAAATGAGGAGTTACCTATGACATGGGATATGCGTTTGAGAATTGCCACTGAAATTGCTGGAGCTCTATTTTACTTACATTCAGTTGCATCTCAACCCATTTATCATAGGGACATCAAATCAACAAATATACTATTGGATGAAAAGTATAGAGCAAAAGTGGCAGACTTTGGAACATCAAGAATGATTTCCAATGAAGCTACTCACCTCACCACAGTGGTTCAAGGTACTTTTGGATACTTGGATCCAGAATATTTTCATACTAGTCAATTTACAGAAAAAAGTGATGTCTACAGTTTTGGAGTAGTTCTTGTTGAACTTTTGACTGGGGAAAAGGCAATATCCTCAGTAAGATCCCAAGAAGTGAAGAGTTTAGCTTCATATTTCAATATCTCTATAGAGGAAAATCGTCTATTTGACATTATTGATAAAAGAGTCATGAAGGAAGGGGAGAAAGAACATATCATTGCAGTTGCCAATCTTGCTAATAGATGTTTGGAGCTAAATGGGAAAAAAAGACCAACAATGAAAGAAGTTACATTGGAATTAGAAGCGGTTCGTGAATTGAACAAGAAGTTTGATGCACATCAAAATCATGAAGAAATTGAGCTTGCTAGAATTGAAGACTACCAACCTTGGGCTAGATATTCTACATCAAATTCATTGCCACATCTAAGTAGCGGAACATTCTCTTCAAACTCTGAGGTTCTTGATATTCTTACATCAAAGTAA 2139 0.3857 MVMQLAFYIIILMMLGSIFPLALTQDPITAHPNCDSRCGTVAIPFPFGMNDPKCYADKWFEIECRNTSQGHQTPYLKSINLEVNLIDPTDSKIRIMNPVFRWNCQSNDARPVVNLKGSPFVYSKDDNKFTAIGCNKIAFLQSNGSQASGCVSVCDEYDNNEVSNDIAFGTDGCVGRFCCETSLPSFLSEFNVTVEDLRNKSGSSEQCSYALIGTEYWYRIPFGSSFEYRSFRDLGNLDYVSAMLEWVVLNSSNLKLPIESANCTEVVSTENRPFGWRCECYTGYSGDPYITGGCIAIDGPSDKKTRAKWAIVGVSASLGSVILLLSIWWLCKVVEKRMIQKRREKFFKQNGGLLLQQRLSSSEVNVDRVKLFSLNDLEKATNHFNTNRVIGKGGQGTVYKGMLVDGKIVAVKKLKVEGKVEEFVNEFVILSQINHRNVVKLLGCCLEAEIPLLVYEFIPNGNLFEYLHDPNEELPMTWDMRLRIATEIAGALFYLHSVASQPIYHRDIKSTNILLDEKYRAKVADFGTSRMISNEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGEKAISSVRSQEVKSLASYFNISIEENRLFDIIDKRVMKEGEKEHIIAVANLANRCLELNGKKRPTMKEVTLELEAVRELNKKFDAHQNHEEIELARIEDYQPWARYSTSNSLPHLSSGTFSSNSEVLDILTSK. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04181 712 Pfam Protein kinase domain 385 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04181 712 Gene3D Transferase(Phosphotransferase) domain 1 458 680 - -
Seca6g04181 712 Gene3D Phosphorylase Kinase; domain 1 355 457 - -
Seca6g04181 712 Pfam Wall-associated receptor kinase galacturonan-binding 34 96 IPR025287 GO:0030247
Seca6g04181 712 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 665 IPR045274 GO:0007166
Seca6g04181 712 FunFam Wall-associated receptor kinase 2 354 457 - -
Seca6g04181 712 CDD STKc_IRAK 390 660 - -
Seca6g04181 712 ProSiteProfiles Protein kinase domain profile. 384 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04181 712 SUPERFAMILY Protein kinase-like (PK-like) 361 652 IPR011009 -
Seca6g04181 712 FunFam Wall-associated receptor kinase 2 458 675 - -
Seca6g04181 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Seca6g04181 712 SMART serkin_6 384 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04181 Seca-Chr6 109547102 109550314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04181 1 706 Receptor kinase-like Gene Family AT1G16260 44.189 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca6g04181 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04181 - - gmx:100798794 908.672