Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04180 ATGTTTGTGAATTTTGTTCAAATCATCAATATCATCTTGATATTGTGGCTGATCACAAATAATCCAGCGCTGCAAGCATCTGCACAAGATCTAATTATGGCAAAACGTGGTTGTAAAGAGAGATGTGGAGGTGTTGACATCCCTTACCCGTTTGGAATGAACAATCCAAAATGCTATGCAGACAAGTGGTTTGAAATAGAATGCAAAAATAGAACAACTCCTTACCTCAAGTATATAAATCTGGAGGTAACATCCATTGATGTCTCTGAAGGCACAGTGCAGATCATGAATCCGATTTTCCATCGGAACTGTGAAGGCGGAGATGCCCGGCCGGTGGTGGATCTGAGAGGAGGGCCTTTTGTGTACTCTCAGGATCATAACAAATTTATTGGCGTAGGGTGCGATAGTATTGCTTTTTTGGTGTCAAATGCCTCACAAGTTAGCGGTTGCGTATCCATTTGTGATGACACTGACAATGATAATGATGATGGCACTTTTGACAGTACAAATTGCCATGGCAAGTCCTGTTGCGAAACTTCTTTGCCGTCGTATCTTTCAGAATATAACGCAACATTTGAAGATCTAAGCAGGAGGATAAGTAATCAGTGCAGTTACGCGTTGATTAGCTATTATAACCCCTCCCGCTACCCATTCTACGAGTACCAATACCAATACATGCATCGACATCGGTATAGTGTTAGTGAACTAAAGCACTTAAAAGAGGTTTCTGCAGTGCTTGAGTGGGAGATTCCGAACAAGATGCTAACCAATTCAACCTTGAAATTGAAATTCCCTGTAGATGAATTTTCCTACTGCTATGCCACTAATGTTACTTTTTCACAAAAGAGAAACTCATCAGGTCAGAGATGTTCCTGCAATAGTGGCTTCTATGGCAATCCCTACGTTGCTGGAGGCTGTATCGGAGTATTTTCAAGCCTTGGATCCATCAGTTTACTCCTTGGTCTTTGGTGGTCGTGTAAAGTTCTACGGAGAAAAATGATAAATAAACGCAAAGAAAAGTTCTTCAAACGAAATGGAGGTTTGTTGTTAGAACAAAGATTGGGCTCTGGTGAAATTAATGTTGATAAAGTTAAACATTTCAGCTTAAAGGAATTAGAGAAGGCAACAGATTACTTCAATATCAACAGAGTACTTGGGAAAGGAGGTCAAGGTACCGTGTACAAGGGTATGCTAGTGGATGGAAAAATTGTTGCAGTAAAAAAGTTTAAGGTTCAAGGAAAGGTTGAAGAATTCATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTATTGGGGTGTTGTTTGGAGACAGAAATTCCTTTGCTTGTCTATGAATTCATTCCTAATGGTAACCTTTTCGAATATTTGCATGAACAAAATGATGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACAGAAGTTGCAGGAGCTCTATTTTACTTACACTCAGCTGCTTCTCTGCCTATTTATCATAGAGACATCAAGTCCACAAATATACTGTTGGATGGAAAGTATAGGGCAAAAGTAGCAGACTTTGGTACATCAAGAATGGTTTCCATTGACGCTACTCACCTCACCACAATAGTTCAAGGAACTTTTGGATACTTGGACCCTGAATATTTCCATACCAGTCAATTTACAGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTCTTGTTGAACTTCTAACTGGGCAAAAGCCAATATCCTCCCTAAGACCAGAAGAAGCCAAAAGTTTGGCAGCATATTTCGTTCTCTTTATGGAGGAAAATCGTCTGTTTGATATTATTGATGAAAGAGTTACAAAGGAAGGGGAGAAAGAACATGTCATTACAATTGCCAATCTTGCATGTAGATGCTTAGAGTTGAATGGGAAAAAACGGCCAACCATGAAAGAAGTTACATTGCAATTAGAAGGGATCCGAAAATTGGTTGAAAGGAAGTCTAATGCACAGGAAAACCATGATGAACTTGAGCTTGCTAGAATTGAAGACTATCAATCTTGGGGTACATATTCTACTTCAAATTCAGGGCTAACTCTATCAACCTTGGAAGTTATGCCTATTATGGATGAAATTCCTTAA 2112 0.3902 MFVNFVQIINIILILWLITNNPALQASAQDLIMAKRGCKERCGGVDIPYPFGMNNPKCYADKWFEIECKNRTTPYLKYINLEVTSIDVSEGTVQIMNPIFHRNCEGGDARPVVDLRGGPFVYSQDHNKFIGVGCDSIAFLVSNASQVSGCVSICDDTDNDNDDGTFDSTNCHGKSCCETSLPSYLSEYNATFEDLSRRISNQCSYALISYYNPSRYPFYEYQYQYMHRHRYSVSELKHLKEVSAVLEWEIPNKMLTNSTLKLKFPVDEFSYCYATNVTFSQKRNSSGQRCSCNSGFYGNPYVAGGCIGVFSSLGSISLLLGLWWSCKVLRRKMINKRKEKFFKRNGGLLLEQRLGSGEINVDKVKHFSLKELEKATDYFNINRVLGKGGQGTVYKGMLVDGKIVAVKKFKVQGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHEQNDDLPMTWDMRLRIATEVAGALFYLHSAASLPIYHRDIKSTNILLDGKYRAKVADFGTSRMVSIDATHLTTIVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGQKPISSLRPEEAKSLAAYFVLFMEENRLFDIIDERVTKEGEKEHVITIANLACRCLELNGKKRPTMKEVTLQLEGIRKLVERKSNAQENHDELELARIEDYQSWGTYSTSNSGLTLSTLEVMPIMDEIP. 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04180 703 SUPERFAMILY Protein kinase-like (PK-like) 363 655 IPR011009 -
Seca6g04180 703 SMART serkin_6 379 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04180 703 Pfam Protein kinase domain 380 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04180 703 FunFam Wall-associated receptor kinase 2 453 670 - -
Seca6g04180 703 Gene3D Phosphorylase Kinase; domain 1 352 452 - -
Seca6g04180 703 ProSiteProfiles Protein kinase domain profile. 379 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04180 703 Pfam Wall-associated receptor kinase galacturonan-binding 38 96 IPR025287 GO:0030247
Seca6g04180 703 Coils Coil 650 670 - -
Seca6g04180 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Seca6g04180 703 Gene3D Transferase(Phosphotransferase) domain 1 453 676 - -
Seca6g04180 703 FunFam Wall-associated receptor kinase 2 349 452 - -
Seca6g04180 703 CDD STKc_IRAK 385 650 - -
Seca6g04180 703 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 657 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04180 Seca-Chr6 109534522 109542522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04180 30 666 Receptor kinase-like Gene Family AT1G79680 43.785 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca6g04180 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04180 - - mtr:11415953 827.78