Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04170 ATGTGCTTCTTTTATTATTTTATAGATTCTTGTTTAAAGTATAAACTTGTTCTTTTTTTTTTTTATGTTGGTTATCACATATATAATGCAAAACCTAATACGGTGACTTTTTTTTTTATAATTTTGTCTTTGTTTCAGTGCCTCGATGGGCATATTACTTGTGGCACTTGTTGTCACATATTTAGGAATAAGTGCACCATATGCTTTTTGCCCAACCATAGCCGGTGTCCTGCTATAGAGAAACTCTTAGAATCTATCAAAATAGCATGCCACAATAAAAAATATGGGTGTAATTCAATAGTGAGGTATAGTGAGAAATATGCACATGAGAAGACATGTATCTTTGAACCATGTTCATGTCCCCAGGAAGGTTGCAACTTTTTTTCCAATTCCAGTGAGTTGGTCATCCACTTCAAGAACAACCATCTACTTGAGGAACCACCATTTAAATATGATGCATTTTTCACTACCTTATTACACATTAACAAGAACACTGTTGTTCTTCAAGCACTGACTGATGGAGAACTTTTTGTTATCAATAACAAGGTTGAGCCTTTAGGGAACGTTCTCACTCTATGTCACATTGGGCCCAATAAAATGAACCCACAATTTGATTTTGAAATGTCGCTCGAGTCTCAACAAGGATGGAACTCTTTATCTCTACAATCAAAAGTGATGAACACTCAATGTGGCAAACCTGATTCATCATCAATGTTCCTTTTGGTTCCGTTTGAGTTTTCTCAACCTTCTGGAGAACATGAGATAGAAATTCGCATAAGAATGATTGGTGTTGTGCAGCCTGAAGGCAACCCATAG 816 0.3591 MCFFYYFIDSCLKYKLVLFFFYVGYHIYNAKPNTVTFFFIILSLFQCLDGHITCGTCCHIFRNKCTICFLPNHSRCPAIEKLLESIKIACHNKKYGCNSIVRYSEKYAHEKTCIFEPCSCPQEGCNFFSNSSELVIHFKNNHLLEEPPFKYDAFFTTLLHINKNTVVLQALTDGELFVINNKVEPLGNVLTLCHIGPNKMNPQFDFEMSLESQQGWNSLSLQSKVMNTQCGKPDSSSMFLLVPFEFSQPSGEHEIEIRIRMIGVVQPEGNP. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04170 271 Pfam Seven in absentia protein family 75 226 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca6g04170 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 138 IPR013083 -
Seca6g04170 271 ProSiteProfiles Zinc finger SIAH-type profile. 85 143 IPR013010 GO:0008270
Seca6g04170 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 43 262 IPR044286 -
Seca6g04170 271 SUPERFAMILY TRAF domain-like 85 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04170 Seca-Chr6 109429958 109430773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04170 44 145 C3H Transcription Factor Family AT2G41980 34.286 4.40e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04170 K04506 - gmx:100778869 186.422