Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04166 ATGGGTGCTCCTAAGCAAAAATGGACAGCGGAAGAGGAAGCAGCACTTAAAGCTGGAGTTGTCAAGCATGGGGTTGGTAAATGGCGTACAATACTCAAGGATCCAGAGTTTAGTGGTGTCTTATATCTGCGGTCAAATGTGGATCTTAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGTTCCAGGGAAAAGTCTAGGTTAGCAGTCAGAAGGGTGCATCAGGCTCCAAAACAGGATGACAACTCTATGGCTATCACTCATGTTGTTCCGAGTGATGAAGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCAAGAGATATGGTGCAGATTCCTGGTCCAAAAAGGTCTATTGTGAGATTGGATAACCTTATAATGGAAGCAATAACTAGCTTGAAGGAGCATGGTGGTTCTAACAAGACAACTATTGCAGCTTTCATAGAGGACCAATATTGGGCACCACCAGACTTCAAAAGGTTGTTGTCAGCAAAATTAAAGTATTTGACAGCTAGTGGAAAACTGATCAAGGTAAAACGCAGGTATAGGATTGCACCTACTCCAGCATATTCAGACAGAAGAAGAAACTCATCCATGTTATTATTGGATGGGAGGCAGAAAGCGGCTATGAAAGTTGACAAGGATGAAACCAACATCCTTACAAAGTCTCAGATAGATTTAGAATTAGCAAAGATAAGGTCCATGACTGCGCAAGAGGCAGCTGCAGTTGCTGCTCGTGCAGTTGCTGAAGCAGAAGCCGCCATATTAGAAGCTGAAGAAGCAGCAAAGGAGGCAGAGGCAGCAGAAGCTGACGCTGAGGCAGCTCAAGCTTTTGCAGATGCTGCACTGAAAACACTAAAAGGAAGAAACACCCCAAAGATGGTAAAACTTGGTTTTTCCTTTGTTTCTTTTTCTTTCTTTTACCTTTGTTTGTAA 942 0.4257 MGAPKQKWTAEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHQAPKQDDNSMAITHVVPSDEEIVDVKPLQVSRDMVQIPGPKRSIVRLDNLIMEAITSLKEHGGSNKTTIAAFIEDQYWAPPDFKRLLSAKLKYLTASGKLIKVKRRYRIAPTPAYSDRRRNSSMLLLDGRQKAAMKVDKDETNILTKSQIDLELAKIRSMTAQEAAAVAARAVAEAEAAILEAEEAAKEAEAAEADAEAAQAFADAALKTLKGRNTPKMVKLGFSFVSFSFFYLCL. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04166 313 PANTHER SINGLE MYB HISTONE 4 1 297 IPR044597 GO:0003691
Seca6g04166 313 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca6g04166 313 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Seca6g04166 313 FunFam Telomere repeat-binding factor 1 2 58 - -
Seca6g04166 313 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
Seca6g04166 313 Gene3D - 2 59 - -
Seca6g04166 313 Gene3D - 118 197 IPR036388 -
Seca6g04166 313 SMART sant 4 59 IPR001005 -
Seca6g04166 313 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca6g04166 313 Coils Coil 243 280 - -
Seca6g04166 313 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Seca6g04166 313 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Seca6g04166 313 CDD SANT_TRF 6 56 - -
Seca6g04166 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Seca6g04166 313 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca6g04166 313 FunFam Telomere repeat-binding factor 1 118 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04166 Seca-Chr6 109397328 109403638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04166 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 68.317 5.00e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g04166 Linker_histone 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04166 K09422 - gmx:100780698 427.943