Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04155 ATGTGCAGCATCTTTGTCCCAACCATGGACAATTACCAAGGCGATTTAACTGACATACTTCGTGCTAGTGGTGGAGCATACGGCACCACCTGCAGCACAGGAACTAGTTCATCATCTGCTCAACCACCTCATGATCATCACTGGCAGCAACAACACCACCAACAGTTCTCTTCTGATCCTTTGAGTTTCTCTAATTCTGTTCTGGAAGACGCTAGAGGAGGCACCTACTTTGGTGATCCATTCTCAACCATGAGAGATCCATTCTTACAAGAGCTTGATATGCCTCCTTCTAATTCCTACTTCAACTCCTCTGCAGGGGGCCTGGAACAAGCAACAGTACCACCTGCTACTGGTACTTTTGGTGTTAGTGTTAGTGTTAGTGATCATAATATTAATACTAGTTCCTCTTGTTCTTCTTCTTCTACTTGTGTTTTTGCACACAAGGTTGTTGATGATGAGATGATGAGAAGGCCAGCTTGTAAGAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCGAAGTTACCTTATCATGATTCATCACCAATAGCACCTTCCCCGAGAGCAATTAAGCCTTCTGTTGTGGTTTCACCAAACATGATTAATGCTAATACCTCCAAGGATTGTCTCATGGACAACACACAAGTGCAGATCTCATCTCCACGGAATCCGGCTCTTAAGCGAAGGAAGAACCAGGCGAAAAAGGTGGTTTGTATCCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTATAGATGCAGCAGCTCAAAAGGTTGCTCTGCAAGGAAGCAAGTTGAGAGGAGCAGAACAGATCCAAATATGTTGGTTATTACTTACACTTCAGAGCACAACCATCCATGGCCAACTCAGAGAAATGCTCTGGCTGGTTCAACAAGATCCCAACCATCCAAGAACAATGCTACTTCTTCTTCTTCCAAGAATACTTCAGAAGCCTCTCAAAAGGGGACAACAAAGCCAAAAGAAGAGCAGCAAGAGAGCAATAGTGAAGGAAATAATTCCCCAGTTGTTGCTGGGAATTCAGGAAACAGTGTGAAGGAAGAGATGGAAGATATAGAGAAGCAGCTTGAGATGGAAGATGGAGAATTCAGTGATGGACTTCCTTATAAGCCATCTTTGATGGAGAGTAACCAGTCATCAGAGGATTTCTTTGCAGAATTGGGAGAAATAGAAGCTGATCCATTAAACCTGTTGTTTAGTCAAGGTTTTGGTGATCAAAGGGATCAATCCAAGGCATTAGATCCATTCCATCTGTTTGACTGGTCAGGAGATAATCACAACAATACCAACTCATTGGAAGAACCTAATAAGAGAAGGTTATAA 1428 0.4307 MCSIFVPTMDNYQGDLTDILRASGGAYGTTCSTGTSSSSAQPPHDHHWQQQHHQQFSSDPLSFSNSVLEDARGGTYFGDPFSTMRDPFLQELDMPPSNSYFNSSAGGLEQATVPPATGTFGVSVSVSDHNINTSSSCSSSSTCVFAHKVVDDEMMRRPACKNIFSNMIQISPNAKLPYHDSSPIAPSPRAIKPSVVVSPNMINANTSKDCLMDNTQVQISSPRNPALKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNATSSSSKNTSEASQKGTTKPKEEQQESNSEGNNSPVVAGNSGNSVKEEMEDIEKQLEMEDGEFSDGLPYKPSLMESNQSSEDFFAELGEIEADPLNLLFSQGFGDQRDQSKALDPFHLFDWSGDNHNNTNSLEEPNKRRL. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04155 475 MobiDBLite consensus disorder prediction 30 64 - -
Seca6g04155 475 ProSiteProfiles WRKY domain profile. 251 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g04155 475 FunFam probable WRKY transcription factor 14 230 310 - -
Seca6g04155 475 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 434 IPR044810 GO:0003700
Seca6g04155 475 Pfam WRKY DNA -binding domain 258 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g04155 475 MobiDBLite consensus disorder prediction 300 350 - -
Seca6g04155 475 SUPERFAMILY WRKY DNA-binding domain 254 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g04155 475 MobiDBLite consensus disorder prediction 30 45 - -
Seca6g04155 475 MobiDBLite consensus disorder prediction 454 475 - -
Seca6g04155 475 Gene3D WRKY domain 230 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g04155 475 SMART WRKY_cls 256 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g04155 475 MobiDBLite consensus disorder prediction 362 376 - -
Seca6g04155 475 MobiDBLite consensus disorder prediction 273 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04155 Seca-Chr6 109307310 109310162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04155 1 475 WRKY Transcription Factor Family AT1G30650 41.870 3.20e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca6g04155 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04155 - - aprc:113852911 618.616