Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04148 ATGGCCATAGAAGCTAAGGCTGCCACCACTCCACAGTTGGCGTTGGCTGATACATATATCAACTGGGACAGGTTGGATAAGACCAAGTTTCACGTTATTGGCACCATACTCTTCACTGCTCAATCAGCGTTGCTTCATCCAACGGCGGTGGTGAAGACGAGGATGCAAGTAGCAGGATCTGGACTCTCTCACATGACAGGAATGTCAGTGTTCACTCACATTTTGCGAAGTGATGGTATTCCTGGAATCTTTAGAGGTTTCGGTACTAGTCACTTGCCACAAGCATCATGTGTTGCCCTTGCAAATGGAGTGGCTGGCATGGTTTCAAACCTGGTTTCTTGTGTATACTTTGTCCCTTTGGATGTGATATGCCAGAGGTTAATGGTACAGGGTCTTCCAGGAACTGTGTGTTGTAGAGGACCGTTTGATGTTATCTGTAGAGTTGTGAAGGTTGAGGGTATTCGTGGCTTATATAAAGGTTTTGGATTAACAGCTGTGACCCAGTCCCCAGCATCTGCATTTTGGTGGGGTTCATATGGTGCAGCACAACACATAATTTGGAGGAGTTTAGGCTACAAAGATGACACGGAGAATAAACCTTCACAAGTGGAAATGATGACAGTTCAGGCTACTGCTGGGATGGTGGCTGGTGCTTGTTCCTCTGTTATCACTACCCCTATAGATACTGTAAAAACATGTCTTCAGGTATATTAA 714 0.4538 MAIEAKAATTPQLALADTYINWDRLDKTKFHVIGTILFTAQSALLHPTAVVKTRMQVAGSGLSHMTGMSVFTHILRSDGIPGIFRGFGTSHLPQASCVALANGVAGMVSNLVSCVYFVPLDVICQRLMVQGLPGTVCCRGPFDVICRVVKVEGIRGLYKGFGLTAVTQSPASAFWWGSYGAAQHIIWRSLGYKDDTENKPSQVEMMTVQATAGMVAGACSSVITTPIDTVKTCLQVY. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04148 237 ProSiteProfiles Solute carrier (Solcar) repeat profile. 97 185 IPR018108 -
Seca6g04148 237 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 237 IPR018108 -
Seca6g04148 237 Pfam Mitochondrial carrier protein 208 236 IPR018108 -
Seca6g04148 237 Pfam Mitochondrial carrier protein 100 187 IPR018108 -
Seca6g04148 237 Pfam Mitochondrial carrier protein 34 97 IPR018108 -
Seca6g04148 237 Gene3D Mitochondrial carrier domain 97 237 IPR023395 -
Seca6g04148 237 Gene3D Mitochondrial carrier domain 21 96 IPR023395 -
Seca6g04148 237 SUPERFAMILY Mitochondrial carrier 23 236 IPR023395 -
Seca6g04148 237 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 93 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04148 Seca-Chr6 109223677 109226729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04148 17 236 Chloroplast and Mitochondria Gene Families AT5G15640 43.426 1.35e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04148 K15121 - sind:105156816 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04148 6 109223677 109226729 Seca6g04148 6 109223677 109226729 ECH