Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04140 ATGGTGGTGGAAGCGGAAATAATCTGTCAGCAGAGGATTCCGGTGTTGGACGTCAAGTATCACCTTTGTGTGGCGCAAGAACATGGAGTCAAGGTTGAGGTTTCACCAACCTCCAATGCCGTTCCGATCTTTAGCCAAGTGCGGGTTTCCTCTGAATCGATCTCTGTCGAAACGTCGTGCTTTGAATCGGCTGTGAGTTGCTCTGATACGATTACAGATTCCATTTTAAAGAGTCCTGCTACCAAGTTCACCCCAAATGTTCGTTCTGGTAGCTGGGCTGATATTGGACCCAGGGGATCAATGGATGATGAACACATTCAAATAGATGATCTAGCTGCCCACCTTGGATTTGTGTTCAAATACCCTATACCAAGTGCGTTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAAGAATGCTATGAGATTATTTTTTGAAGATGCTAATATGCTGCAATCATATGATACCGATGCACTTTTTCTAAAGAGGTTGGAAGATTCACATCGGAGAGCTTTTCTAGGTGCAGACCTTGCCTTGGCTGATGAACAAAGTGTTAATAGTTCCTGCGGGACAACAGCATTGACTGCCCTTATACTTGGAAGGCATTTGCTGGTGGCTAATGCTGGTGATTGTCGAGCAGTACTTTGTAAGCGAGGAGTAGCTGTTGACATGTCTCAAGATCACAGGCCAAGTTATTTACCAGAACGCAGGAGAGTGGAGGAGTTGGGTGGTTTCATTGATGATGGGTATCTAAATGGTTATCTTTCTGTCACTCGTGCCCTTGGGGATTGGGACTTAAAATTTCCACTTGGTTCTGCATCACCTCTTATTGCTGAGCCAGATGTTCAAGTAGTCACATTGACTGAGGATGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTGATGTCAAGCCAGGATGCAGTTAGTCTTGTCCGGCGTGGATTAAGGAGGCATAATGACCCACAACAATGTGCCAGAGAGCTAGTCAAGGAAGCATTGCGCCTACACACGTCTGATAATCTTACTGTGATTGTTATTTGCTTGTCCTCTGTCGAAAGCATTGTTGAATCATGTCCACCCCAAAGGCGAAGATTCAGAGCTTGCTCTCTATCTGAAGAGGCCCGAAACAGATTGAGGAGCTTGCTAGAGGGAAACTGA 1188 0.4545 MVVEAEIICQQRIPVLDVKYHLCVAQEHGVKVEVSPTSNAVPIFSQVRVSSESISVETSCFESAVSCSDTITDSILKSPATKFTPNVRSGSWADIGPRGSMDDEHIQIDDLAAHLGFVFKYPIPSAFYAVFDGHGGPDAAAFVKKNAMRLFFEDANMLQSYDTDALFLKRLEDSHRRAFLGADLALADEQSVNSSCGTTALTALILGRHLLVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGSASPLIAEPDVQVVTLTEDDEFLIIGCDGIWDVMSSQDAVSLVRRGLRRHNDPQQCARELVKEALRLHTSDNLTVIVICLSSVESIVESCPPQRRRFRACSLSEEARNRLRSLLEGN. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04140 395 SMART PP2C_SIG_2 103 358 IPR001932 -
Seca6g04140 395 SMART PP2C_4 78 356 IPR001932 -
Seca6g04140 395 Gene3D - 72 363 IPR036457 -
Seca6g04140 395 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Seca6g04140 395 PANTHER PROTEIN PHOSPHATASE 2C 77 356 IPR015655 GO:0004722|GO:0006470
Seca6g04140 395 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Seca6g04140 395 SUPERFAMILY PP2C-like 82 359 IPR036457 -
Seca6g04140 395 CDD PP2Cc 87 358 IPR001932 -
Seca6g04140 395 FunFam Probable protein phosphatase 2C 22 72 361 - -
Seca6g04140 395 Pfam Protein phosphatase 2C 98 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04140 Seca-Chr6 109156126 109158483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04140 1 394 PP2C-type Phosphatase Gene Family AT1G48040 57.855 1.10e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Seca6g04140 PP2C 1.6e-64 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04140 K14803 - gmx:100798957 694.115