Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04135 ATGGAAGTGAAAGGAAGTGTAAGCAATTCCAACACCACCACCATGATCCAAAGCGAGGATGATATGGACCTCCGAAGAGGCCCATGGACCGTCGATGAGGATCTTGCCCTTATCAATTACATTGCCAATCACGGTGAAGGTCGCTGGAACTCCCTTGCCCGTTCTGCTGGACTCAAACGAACTGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTCCGTCCAGATGTTCGACGTGGCAACATCACACTCGAAGAACAACTTCTCATTCTTGAACTCCATACTCGCTGGGGAAACCGATGGTCCAAAATTGCTCAATATTTACCTGGAAGAACTGATAATGAGATTAAGAATTATTGGAGAACCCGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTCTGGATGCCAAGGCTGGTGGAGCGCATTCAAGCCGCCGCAGCCGCCACAGCCACCGCCACAGCCACCGCCACCGCCACCAATGGTTCTCCAACCTTATCTCCTAGTGCCACTACAACCGTCGCTACAAACCATACCGCATACAACTACAACAACAACAATTTTGAGGTTCAAAGTGGGAACATGGTGTTACCTCCGGCAATTATGAACAACAACTTTGGCGGTTCAAATGTTACACAAAGTTATACTCCTGAGAATAGTAGCAGTGGCACAGTAGCATCATCGGACTCATTTGGGACACAAGTCTCGGACTTGACTCAAGATTATTACAATGTTGTTGTTGGTAATAACAACAACCCTAATCCTGATTACTATCAACAAGCACCTCAACTTGGGTTCTTAGATTGCATCACTAGCCCCTCCAGGTTGTTCTCTCAGGAGATGGATTTCCAATCCATGGAACCAAACACCCAATGGATGCAGAGTGGGGACAATTCTGACAATTTCTGGAATGTTGAAAACATGTTGCTTTTTCAACAACTCAGTGACAACATGTGA 996 0.4608 MEVKGSVSNSNTTTMIQSEDDMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAATATATATATATNGSPTLSPSATTTVATNHTAYNYNNNNFEVQSGNMVLPPAIMNNNFGGSNVTQSYTPENSSSGTVASSDSFGTQVSDLTQDYYNVVVGNNNNPNPDYYQQAPQLGFLDCITSPSRLFSQEMDFQSMEPNTQWMQSGDNSDNFWNVENMLLFQQLSDNM. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04135 331 Gene3D - 83 146 - -
Seca6g04135 331 Gene3D - 23 79 - -
Seca6g04135 331 CDD SANT 28 73 IPR001005 -
Seca6g04135 331 SMART sant 78 126 IPR001005 -
Seca6g04135 331 SMART sant 25 75 IPR001005 -
Seca6g04135 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
Seca6g04135 331 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 198 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca6g04135 331 CDD SANT 99 122 IPR001005 -
Seca6g04135 331 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Seca6g04135 331 FunFam Myb transcription factor 26 78 - -
Seca6g04135 331 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Seca6g04135 331 FunFam MYB transcription factor 83 146 - -
Seca6g04135 331 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Seca6g04135 331 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Seca6g04135 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Seca6g04135 331 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04135 Seca-Chr6 109037883 109040180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04135 9 173 MYB Transcription Factor Family AT5G49620 74.302 3.68e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g04135 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04135 K09422 - gmx:100305347 463.766