Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04131 ATGTCCAATTTCAACAAGGGTGATCCCGTGGAGGTGACCAAGGCCAACGACAGCGATAGCCATTGCTACTACTACCCTGCCACCGTTGTACGGCCACCCTCCAAAAACAAGAACCTGGTGTTCGTTGAGTATCTCACCCTCTTCGCCCCTTCCTCACACTCCCAATCCCAAACCCCCAAACGCCTCAGGGAGTACGTCAATGTCGCTAACGTCAGGCCCAAGGTTCCTCACCAGCTCAACCCTTGGTTCAAGGTCGGTGACTCCGTCGACGCCTTCCGCCATCCCCTCAATGCTTGGTGCCCAGCCACCGTCACTGACATTCTCGAAAATTCCACCTACCTCGTCCACTTTCACGGCCCTCACCAACACTCTGCCCCCGTCGATCACTGCAACCTGCGCCTTCACCGAGATTGGCTCCATGGAGATTGGGTCCCACCTCTCCCCCAACTCCAACAGGAGAAGCCCCCTCAGATATTGCCAAAGCCTGATAATCTTAGGTTTAAGATTAAATATAGCAGGAAACCACTAAAGGGATCAAAGTTTAAAAAAGGGGGAATAGTGGAAGTCAGCAACGATGATGAAGGTTATAAGGGTGCTTGGTTTATTGCTACTATTGTCGACATAATAGGAAAAGACATGTTTCTAGTAGAATATAGGGACCTGACAACAGATGATGGCACCCAGCTCTTGAAAGAAGAAACCAATTCAGGGTTTATTAGGCCATGTCCCCCTGAAGTTCCAACTGTGGGTTCTTTCAAACAGTTTCAAGAAGTTGATGCATGGTACAATGATGGATGGTGGGAAGGTTTGGTTCTTGAAGTACTGAATAGAAGAGAGTGTTTGGTTTCTTTTATGCACAGGGATGTATTGAAATTTGAAAATTCTAAACTAAGGCCTCATCAGGACTGGATCGATGGGAAATGGGTCATGTCTTCCAAGACATCAAGTGAGCTGGTGGAGAAGTTTGGAGATGTGATGCCTAGAGCCAAGAGTCTCATTGGAAATAAATTAATCTTGAAATATCGGAAGCCTAGAGATGTAATGGAAAGGACCACAAACACCAAAGACAAATTTGTATTGCATTTCTGTAAAGGTGCAGACATAGAAGTCAGAAGCGATGAAGAAGGATACCAAGGTTCCTGGTATGCTGCCATTGTTGTTGACTATTTGCAGAATGGCAAGTACTTGGTGGAGTACTTGACCCTGAAAACAGATGACTTAACTGAGCAACTGAAAGAAGAAGCAGATGCTTCAGATATCAGGCCATATCCACCAGATATCAGTCAAGATTATCGCTTTGCACTGCATGAATGGGTTGATGCTTGGTATAATGATGGATGGTGGGTAGGTCAGATATCTAGTGTTCTTCGTAACTTCAAGTATATGGTTTACTTTTGGCCTACAAAGGAGGAGCTGGAATTTGAGCATTATAATCTGAGGCCTCATCAAGAATGGATTGATGGAAGATGGGTGCGTGCTTCTTAG 1485 0.4572 MSNFNKGDPVEVTKANDSDSHCYYYPATVVRPPSKNKNLVFVEYLTLFAPSSHSQSQTPKRLREYVNVANVRPKVPHQLNPWFKVGDSVDAFRHPLNAWCPATVTDILENSTYLVHFHGPHQHSAPVDHCNLRLHRDWLHGDWVPPLPQLQQEKPPQILPKPDNLRFKIKYSRKPLKGSKFKKGGIVEVSNDDEGYKGAWFIATIVDIIGKDMFLVEYRDLTTDDGTQLLKEETNSGFIRPCPPEVPTVGSFKQFQEVDAWYNDGWWEGLVLEVLNRRECLVSFMHRDVLKFENSKLRPHQDWIDGKWVMSSKTSSELVEKFGDVMPRAKSLIGNKLILKYRKPRDVMERTTNTKDKFVLHFCKGADIEVRSDEEGYQGSWYAAIVVDYLQNGKYLVEYLTLKTDDLTEQLKEEADASDIRPYPPDISQDYRFALHEWVDAWYNDGWWVGQISSVLRNFKYMVYFWPTKEELEFEHYNLRPHQEWIDGRWVRAS. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04131 494 CDD Tudor_Agenet_AtDUF_rpt2_4 439 481 - -
Seca6g04131 494 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 2 154 - -
Seca6g04131 494 CDD Tudor_Agenet_AtDUF_rpt1_3 181 244 - -
Seca6g04131 494 CDD Tudor_Agenet_AtDUF_rpt2_4 256 299 - -
Seca6g04131 494 CDD Tudor_Agenet_AtDUF_rpt1_3 362 425 - -
Seca6g04131 494 SMART agenet_At_2 250 305 IPR014002 -
Seca6g04131 494 SMART agenet_At_2 81 140 IPR014002 -
Seca6g04131 494 SMART agenet_At_2 179 247 IPR014002 -
Seca6g04131 494 SMART agenet_At_2 360 428 IPR014002 -
Seca6g04131 494 SMART agenet_At_2 431 487 IPR014002 -
Seca6g04131 494 Pfam Agenet domain 365 425 IPR008395 -
Seca6g04131 494 Pfam Agenet domain 187 244 IPR008395 -
Seca6g04131 494 Pfam Agenet domain 7 76 IPR008395 -
Seca6g04131 494 Gene3D - 1 82 - -
Seca6g04131 494 Gene3D - 350 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04131 Seca-Chr6 108957826 108963317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04131 371 485 PHD Transcription Factor Family AT5G58610 28.889 1.08e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04131 - - adu:107483399 593.964