Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04114 ATGGAGGAGAAGAGAGAAGGGGCACACCCCACCAACTCATCATCCACACCCACCACCACCATGGCATTTTCCGACGAGATTCCGAGCATAAGCACCACTCACTTGACTTTCCCTTTCCAACCCACCTTCTTTGACATGATACCATCTTCCTCCTGTGACCAAAAGGCTTCATCTTTCGGCTTCATGGACTTACTGGGTGTCCACGATTACAACAACACTTCCTTTTTGGATTGGCCACCCACCGCCACCACCATCGCCACACCCACCACCGTCCACCACCCTCTTCCGTCACCGGCGAGCTCCAATGTCCCAGACTCCTCGGAGGTGTTGAACACTCCGGCATCGCCCAATTCATGTTCAATTTCTTCATCATCGAATGAGGCCACCGCCCACAACGCTGCGAACGAACGACAGAGTGGTAAACATGAAGCAGAGGAAGAGGACGGAGGCAGAGGAGATGACCCAGATGAAGACAAGACTAAGAAACAGAAAATAAATAATAAAAATTGGAAATTTAACACAAAATTGATGATCTGCAGGTTGAAAGCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCTCGATTTGCATTCATGACAAAGAGCGAAGTGGATCACCTAGACGATGGGTATAGATGGCGCAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACGGCTGGTTGTGGTGTGAAGAAGCGCGTGGAGCGTTCCTCCGATGACCCTTCCATTGTTGTAACAACCTACGAGGGACAACACACCCATCCATGCCCCGCCACGTCACGCTCTAGCCTCGGATTCATGCACGAACCTACTGGCTTCGGTGCCAATGCTTTCGGTTCGCAGCACTTGTTGCAACCGTTTCAACAGCATCAAAACATGGCAATGCCACAAGCTGCAACAACAACTACTTTGTCGTATAATAACTCCATTACCCCTCCTTTGAGCGGTTACTTGAATACGGCGTCGTTTGGTGGATTTGTTCAAGAGCATGGAAATCATGTTAGAGGTTTTGGATCGGTTCAGGAGGCTATGTTAAGGGACAATGGGTTGCTTCAAGACATTATTGTGCCGAAGCAAGTGAGGAAGGTGGGAGAGAAGAAAGAAGAGATGAGTAGAGGGGACAATTAA 1158 0.4896 MEEKREGAHPTNSSSTPTTTMAFSDEIPSISTTHLTFPFQPTFFDMIPSSSCDQKASSFGFMDLLGVHDYNNTSFLDWPPTATTIATPTTVHHPLPSPASSNVPDSSEVLNTPASPNSCSISSSSNEATAHNAANERQSGKHEAEEEDGGRGDDPDEDKTKKQKINNKNWKFNTKLMICRLKAKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPATSRSSLGFMHEPTGFGANAFGSQHLLQPFQQHQNMAMPQAATTTTLSYNNSITPPLSGYLNTASFGGFVQEHGNHVRGFGSVQEAMLRDNGLLQDIIVPKQVRKVGEKKEEMSRGDN. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04114 385 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 301 IPR044810 GO:0003700
Seca6g04114 385 MobiDBLite consensus disorder prediction 87 167 - -
Seca6g04114 385 MobiDBLite consensus disorder prediction 87 135 - -
Seca6g04114 385 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g04114 385 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g04114 385 FunFam WRKY transcription factor 57 193 267 - -
Seca6g04114 385 Gene3D WRKY domain 191 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g04114 385 SMART WRKY_cls 207 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g04114 385 ProSiteProfiles WRKY domain profile. 202 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g04114 385 SUPERFAMILY WRKY DNA-binding domain 199 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g04114 385 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04114 Seca-Chr6 108831403 108833682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04114 180 365 WRKY Transcription Factor Family AT2G47260 50.777 5.08e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca6g04114 WRKY 2.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04114 - - mtr:11408791 405.601