Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04112 ATGGCATCATCGACTCTGATCTCAAACCCAGCCACCACACGTGACCCTCACAGGGCAAAGAAGAAGAAGAAAGCACAGTTGAAGAATCAGCAACAACAAGAGCAAGAACAGAGCCACGCCAAATGGAGATCACAGTCACAGCAACAAATCTACTCTTCAAAGCTTCGCCAAGCCTTAGCCAGAGTCAACCTCGACGGCGGAACCGGAGACGCACCTCGCCGGGGAAAGGCCGTCCGGGAAGCCGCAGACAGGGTACTCGCCGTGGCAGCAAGGGGAAGAACACGGTGGAGCAGAGCCATACTGACCAATAGGCTGAAACTCAAGTTCAGAAAACAGAGCAAGAGACAACAGAGAGTTGTTGGACCGGTCCGGTCCAAGAAGCCCCGGTTCAGCGTTGTCCGGCTCAAGGGAAAGACCCTTCCGGCGGTTCAGAGGAAAGTTAAGTTCCTCGGCCGGTTGGTTCCCGGTTGCCGGAAAGAATCGTTACCGGTTATTCTAGAAGAAGCCATTGATTACATTCCAGCACTTGAGATGCAGGTTCGAGCCATGACAGCTCTCGCTGATTTACTCCTTGGCTCTTCCTCTTCCTCTTCTTCTTCCGCCGCATCCGCCGCCACCGGCGGCGGCTCCAGTTTCGCGCCGCCGAGTTGA 651 0.5515 MASSTLISNPATTRDPHRAKKKKKAQLKNQQQQEQEQSHAKWRSQSQQQIYSSKLRQALARVNLDGGTGDAPRRGKAVREAADRVLAVAARGRTRWSRAILTNRLKLKFRKQSKRQQRVVGPVRSKKPRFSVVRLKGKTLPAVQRKVKFLGRLVPGCRKESLPVILEEAIDYIPALEMQVRAMTALADLLLGSSSSSSSSAASAATGGGSSFAPPS. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04112 216 MobiDBLite consensus disorder prediction 1 49 - -
Seca6g04112 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 192 IPR036638 GO:0046983
Seca6g04112 216 Coils Coil 17 37 - -
Seca6g04112 216 CDD bHLH_AtIBH1_like 132 187 IPR044549 GO:0006355
Seca6g04112 216 MobiDBLite consensus disorder prediction 194 216 - -
Seca6g04112 216 MobiDBLite consensus disorder prediction 30 49 - -
Seca6g04112 216 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 194 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04112 Seca-Chr6 108772956 108773606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04112 41 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 58.125 9.76e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04112 - - gmx:100792237 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04112 6 108772956 108773606 Seca6g04112 6 108772956 108773606 ECH
Seca12g00436 12 3775836 3776498 Seca6g04112 6 108772956 108773606 PCT