Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04110 ATGCTTCATGCATTGATGAATCTTCTCTCTCCCTGTTGGAAGCCGTTCGGGCACGGTGATGAGTCTTCAGCCGGCATTGTCGGAAGAGAAGGCAAAGACGGCTTGCTCTGGTTCAGAGATATCGGAAAGTATGGCTCCGGCGAGTTCTCGATGGCGGTGGTTCAGGCCAATCAGGTCCTCGAAGACCAGAGCCAGATCGAGTCCGGTCCTCTCGGCACCTTCGTCGGCGTTTACGATGGCCACGGTGGACCCGACGCGTCGCGATACGTGTGCGATCACTTGTTCCGCAATTTCCAAGGCTGTCTTAGACTTAATGTAGGTGCAGCAGTATCGGGTGAGTCACGGGGTGTTGTGACAGCTGAGACCATTCAAACAGCTTTCCGCAGAACAGAAGAGGGGTTCACTGCTCTTGTTTCAGAATTATGGAATACGCGACCTCAAGTTGCAACTACTGGAACGTGTTGTCTAGTTGGTGTGATTTTTCAGCAGACACTATTCGTGGCAAATGTTGGAGATTCCCGTGTTGTGTTGGGCAAGAAAGTTGGCAACACTGGTGGGATTGCTGCAATTCAGCTGTCTACGGAACACAATGCAAATCTTGAGGCTGTTAGGCAGGAACTCAAAGAATTACACCCTAATGATCCTCAAATTGTTGTTCTCAAACATGGTGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATTGGTGACGTGTATATGAAACATGCACAGTTTAACCGGGAACCAATTAATCCAAAGTTCAGACTTCCTGAACCAATGGACATGCCTATCTTGTCCGCTAATCCATCTATTATTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATCAAAAAGCTGTTGAGATTGTTCACAGCAATCCTCGTGCGGGTAGTGCAAAGAGACTTGTGAAGGCTGCCCTGCACGAAGCGGCAAGAAAACGTGAAATGCGATATTCAGACCTTCGTAAGATTGATAAGAAGGTTCGACGCCATTTTCATGATGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATATCTAGAGGAACAGTTCTAAACCCGCCACTCTCAATTCGAAGTGCTCTCGATCACTGA 1146 0.466 MLHALMNLLSPCWKPFGHGDESSAGIVGREGKDGLLWFRDIGKYGSGEFSMAVVQANQVLEDQSQIESGPLGTFVGVYDGHGGPDASRYVCDHLFRNFQGCLRLNVGAAVSGESRGVVTAETIQTAFRRTEEGFTALVSELWNTRPQVATTGTCCLVGVIFQQTLFVANVGDSRVVLGKKVGNTGGIAAIQLSTEHNANLEAVRQELKELHPNDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINPKFRLPEPMDMPILSANPSIISHPLQPNDSFLIFASDGLWEHLSNQKAVEIVHSNPRAGSAKRLVKAALHEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLNHDLISRGTVLNPPLSIRSALDH. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04110 381 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Seca6g04110 381 FunFam Probable protein phosphatase 2C 42 39 366 - -
Seca6g04110 381 Gene3D - 39 366 IPR036457 -
Seca6g04110 381 SUPERFAMILY PP2C-like 57 359 IPR036457 -
Seca6g04110 381 SMART PP2C_4 35 356 IPR001932 -
Seca6g04110 381 Pfam Protein phosphatase 2C 72 329 IPR001932 -
Seca6g04110 381 PANTHER PROTEIN PHOSPHATASE 46 356 IPR015655 GO:0004722|GO:0006470
Seca6g04110 381 CDD PP2Cc 49 358 IPR001932 -
Seca6g04110 381 ProSiteProfiles PPM-type phosphatase domain profile. 45 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04110 Seca-Chr6 108741391 108748073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04110 1 378 PP2C-type Phosphatase Gene Family AT4G38520 57.364 1.94e-155 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04110 K01102 - gmx:100790813 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04110 6 108741391 108748073 Seca6g04110 6 108741391 108748073 ECH
Seca12g00432 12 3736515 3741113 Seca6g04110 6 108741391 108748073 PCT