Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04105 ATGGCTTCAACATTCACAGTGGCAATCATCCTTTTTACCTTGTTTTGCATGTCATATTATGCTCTTGGCTATGATGCAAAAACGGTCATAGACTCTCCTTTGTTAACAGAAAAGTTAGGAATTAATCGCACTATCAAAGTAGATATCAATGGAAATGGGGACTTCAAATCAGTCCAAGATGCCATAGATTCCATCCCTGATGGAAATTCTAATTGGGTCATTGTCCATGTTAGAAAAGGAGTATACAGGGAGAAGGTGCACATACCAAAGACTAAGCGTTATATATTCATGAGAGGGAATGGAAGAGGAAAAACTGCCATAGTTTGGTCTCAAAGCTCTTCTGACAACAAAGCCTCTGCTACCTTCAAAGCCGAAGCCACTGACTTCATTGCCTTTGGAATTAGCTTCAAGAATGAGGCACCTACAGGGGTTGCTTATACCTCGCAGAATCAATCGGTGGCAGCATTTGTGGCAGCAGACAAAATAGCATTTTACCACTGTGCATTTTATAGTACTCATAACACTCTCTTTGATTATAAAGGCAGACATTACTATGAGTCCTGCTACATTCAAGGCTCTATTGATTTCATATTTGGCCGTGGTAGATCTATCTTTCATAGCTGTGAGATGTTTGTGATTGGTGACAAAAGAGTATCAATTCATGGGTCAGTGACGGCTCAAAACAGGGAAAGTGAACGTGAGATTAGTGGATTTATCTTTATCAAAGGCAAGGTTTATGGCATTGGTGGGGTGTACCTAGGAAGAGCTAAGGGTGCATTTTCTAGGGTGATTTTTGCTAGGACATACCTTTCAAAGACCATTGTCCCAGAAGGGTGGACCAATTGGAGCTATCATGGGAGCACAGAGAATCTATTCCACACGGAGTATAAATGTCATGGACCTGGAGCCACTAGAATGGGACGCGCTCCTTGGTCGAAGGAGCTTACTGACGAACAAGTTGCTCCCTTTTTATCTATTGATTACATTGATGGCAAGAATTGGTTACCAGTATGGCAATGA 1020 0.4157 MASTFTVAIILFTLFCMSYYALGYDAKTVIDSPLLTEKLGINRTIKVDINGNGDFKSVQDAIDSIPDGNSNWVIVHVRKGVYREKVHIPKTKRYIFMRGNGRGKTAIVWSQSSSDNKASATFKAEATDFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSIFHSCEMFVIGDKRVSIHGSVTAQNRESEREISGFIFIKGKVYGIGGVYLGRAKGAFSRVIFARTYLSKTIVPEGWTNWSYHGSTENLFHTEYKCHGPGATRMGRAPWSKELTDEQVAPFLSIDYIDGKNWLPVWQ. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04105 339 Gene3D - 39 338 IPR012334 -
Seca6g04105 339 SUPERFAMILY Pectin lyase-like 41 337 IPR011050 -
Seca6g04105 339 FunFam Pectinesterase 40 339 - -
Seca6g04105 339 ProSitePatterns Pectinesterase signature 2. 190 199 IPR033131 -
Seca6g04105 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 42 335 - -
Seca6g04105 339 Pfam Pectinesterase 46 331 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04105 Seca-Chr6 108717074 108719215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04105 5 335 Carbohydrate Esterase AT5G47500 35.714 1.55e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04105 - - gmx:100792967 580.867