Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04102 ATGGGAACCCCAGAAGCAGAGGAAGAGCTTCTCAAGAAGATTGAAAGGCTGGAAGTTGGTCACGCTCACCTCAGGCAAGAAATGTCGAAGCTCAAGCTCTCTCAGCGACGCAGGTCTCACTCTGTGTCACCACAGCGTTCAAGGTTGGGTGCTGCTTCGTGTAACAAAGGCCCTTCTTCTCCTCTGCAGAGAGAGAGTCGCAGCAATCATGAGAATCAAAATGGTGGCAAGTATCTCAATATCTTGCAGTCAATGGGCCACTCTGTTCATATATTGGATCTTCAATGCCGTATCATATACTGGAACCCTAGTGCTGAAAACCTGTATGGTTATAAAGTTGAAGAAGTTCTTGGGCAGAATGGGATTGAGCTGCTTGTGGACCCCAGTGAATTTGCCTTAGCCAATGATATATTCAACAGTGTCAAAATGGGAGAGAGCTGGACTGGCCAGTTCCCTGTCAGGAATAAGATGGGGGAGAGGTTTACAACTGTGTCAACCAATACACCTTTATATGATGATGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCTAGTGATTCAAAACCCTTTCTTGAAACCAGAGTTCCCTTTTCAGGAGGGAAGAATGCAGAATCAGATTCAGGTTACAACTTTCCTAGAAGTGGCATTACAAATAAACTAGGTCTTGACTCTCAGCAGCCACTTCAAGTTGGTCTAGCATCCAAAATTTCAAATTTGGTTAGTCTTAGTATAGCTTGGCGTGTCTTGATTTTGCAATCATTAAAACAGGCATCAAAGGTGAGTGACAAAGTTAAGTCTAGAATTCGGAATAGAGAAAATAATGTTGATGGAGAAGGTGGGAGTGGAGAAAGTCATCATTTTGAGCATAGTTTCTCAGACTGTATTCTTTCTGATCAAAGAGAAGATGGTAATTCCAGTGGAGCTAGCACACCCCGAGGAGAGGTGCCACCATCTCCTTTTGGTGTATTTTCTCATGTTGAAGAGAAATCTCCAGGAAAAACTATGAGGGACTATGGCGATGAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCTAGGGCTGAAGCATGGATTCAAAAGAAAACATTGTCATGGCCATGGAGAGGAAATGATCGGGAAGGATCCGAGGCAAAGAATGTCCGTGTTGCTTGGCCTTGGTTGCAGGGTGATCAGGAAAAAGAGCCAGTTAATCAGAAGAATCCTTTTTCTGCGTTGAAGCCAGAAAGCCAGGTAGGTGAAAGTAATCGACCTGTTAATAATGAGGCTTCAGGATCCTGGTCCTCCTTCAATGTTAACAGCACAAGTAGTACCAGCAGCTGTGGGAGTGGCAGCAGTTCTACTGCCAATAATAAAATGGATGTTGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACTTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTCGCTGTCAAGGTTTTCTCAAAGCAAGAATACTCTGATGATGTGATATTATCCTTCAGACAAGAGGTGTCTGTTATGAAAAAACTTCGCCATCCAAATATTCTTCTTTTTATGGGGGCAGTGACTTCACCTCAACGTCTATGCATTGTAACAGAGTTTCTCCCACGCGGAAGCTTGTTTCGTTTGCTCCAAAAACACATATTCAAATTTGACTGGAGACGGCGAGTTCATATGGCCGTAGATATTGCTCGAGGTGTGAATTATCTTCATCATTGCAACCCCCCTATCATCCATCGAGATTTAAAGTCATCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTATTAAGCACGAAACATATCTCACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCCTCAGATGAGAAATCGGACGTTTACAGCTTTGGGGTGATCATGTGGGAAATTGCAACTGAAAAGATCCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGGCTAGAAATTCCAGAAGATGTTGATCCGCAATGGGCTTCTATAATCGAGAGCTGCTGGCACAGGTGTGCATTCTTGTCACTCTATCATACTTCTGACTCCTTATTTCTTCCCCACATCTGTAAATATCCAAACACAAGTATTGTCACCCTTTCATAA 2211 0.4301 MGTPEAEEELLKKIERLEVGHAHLRQEMSKLKLSQRRRSHSVSPQRSRLGAASCNKGPSSPLQRESRSNHENQNGGKYLNILQSMGHSVHILDLQCRIIYWNPSAENLYGYKVEEVLGQNGIELLVDPSEFALANDIFNSVKMGESWTGQFPVRNKMGERFTTVSTNTPLYDDDGSLVGVICVSSDSKPFLETRVPFSGGKNAESDSGYNFPRSGITNKLGLDSQQPLQVGLASKISNLVSLSIAWRVLILQSLKQASKVSDKVKSRIRNRENNVDGEGGSGESHHFEHSFSDCILSDQREDGNSSGASTPRGEVPPSPFGVFSHVEEKSPGKTMRDYGDESEGKPIHKIITSRAEAWIQKKTLSWPWRGNDREGSEAKNVRVAWPWLQGDQEKEPVNQKNPFSALKPESQVGESNRPVNNEASGSWSSFNVNSTSSTSSCGSGSSSTANNKMDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKKLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQKHIFKFDWRRRVHMAVDIARGVNYLHHCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRIKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVIMWEIATEKIPWDTLNAMQVIGAVGFMNHRLEIPEDVDPQWASIIESCWHRCAFLSLYHTSDSLFLPHICKYPNTSIVTLS. 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04102 736 Gene3D Transferase(Phosphotransferase) domain 1 548 714 - -
Seca6g04102 736 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 207 707 - -
Seca6g04102 736 MobiDBLite consensus disorder prediction 265 343 - -
Seca6g04102 736 CDD PAS 89 186 IPR000014 -
Seca6g04102 736 Coils Coil 7 27 - -
Seca6g04102 736 Pfam PAS domain 90 186 IPR000014 -
Seca6g04102 736 MobiDBLite consensus disorder prediction 44 75 - -
Seca6g04102 736 Gene3D Phosphorylase Kinase; domain 1 462 546 - -
Seca6g04102 736 FunFam PAS domain-containing protein tyrosine kinase 462 546 - -
Seca6g04102 736 MobiDBLite consensus disorder prediction 387 428 - -
Seca6g04102 736 ProSiteProfiles Protein kinase domain profile. 469 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04102 736 MobiDBLite consensus disorder prediction 265 296 - -
Seca6g04102 736 SUPERFAMILY Protein kinase-like (PK-like) 455 706 IPR011009 -
Seca6g04102 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Seca6g04102 736 NCBIfam PAS domain S-box protein 78 186 IPR000014 -
Seca6g04102 736 SMART pas_2 76 142 IPR000014 -
Seca6g04102 736 Pfam Protein tyrosine and serine/threonine kinase 469 706 IPR001245 GO:0004672|GO:0006468
Seca6g04102 736 CDD STKc_MAP3K-like 475 706 - -
Seca6g04102 736 MobiDBLite consensus disorder prediction 329 343 - -
Seca6g04102 736 MobiDBLite consensus disorder prediction 27 75 - -
Seca6g04102 736 SUPERFAMILY PYP-like sensor domain (PAS domain) 80 183 IPR035965 -
Seca6g04102 736 MobiDBLite consensus disorder prediction 297 312 - -
Seca6g04102 736 MobiDBLite consensus disorder prediction 394 428 - -
Seca6g04102 736 FunFam PAS domain-containing protein tyrosine kinase family protein 547 709 - -
Seca6g04102 736 ProSiteProfiles PAS repeat profile. 74 145 IPR000014 -
Seca6g04102 736 Gene3D PAS domain 87 189 - -
Seca6g04102 736 SMART serkin_6 469 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04102 Seca-Chr6 108692065 108697922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04102 1 705 MAP Kinase Kinase Kinase AT3G06620 56.933 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca6g04102 PK_Tyr_Ser-Thr 5.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04102 - - gmx:100815858 1037.33