Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04101 ATGGCATCAGCAAGCAGAGGAGGAAATGCTTCAGTGTCGCAGCAACAGGTTCAGAGTTGGAGAACAACAACGAAGGGAAGCGAAGAGGAGAAGAAGAGAGGGGATTCCATGAGGAAAGCCATAGCACAGTACACTGAAGACGCAAGGCTCCATGCCGTTTTTGAACAATCCGGTGAGTCCTTCGATTACTCACAGTCGGTGCGCGTTACGGCGGAATCGGTGCCGGAACAGCAGATAACGGCTTACTTGGCGAAAATTCAGCGCGGCGGTTTCATCCAACCCTTCGGTTCCATGATCGCTGTTGACGAGCCCTCGTTTCGCGTCCTTGCTTACTCCGATAACGCTCGTGACATGCTTGGAATCGCTCCTCAATCGGTTCCTTCGCTTGAAGATGATTCCTCTTCCTCCACCTTGACTTTTGGGACCGACGTTCGCTCTCTCTTCACACACTCCAGTGCCCTACTCCTTGAGAAGGCTTTCGCCGCACGTGAAATCAGCCTCATGAACCCTATCTGGATCCATTCCCGTTCCTCCGGCAAGCCTTTCTACGGCATCCTCCACCGTATCGACGTTGGCGTTGTCATCGATTTGGAGCCAGCACGATCGGAGGACCCTGCGCTGTCCATTGCTGGCGCCGTTCAGTCTCAGAAGCTCGCTATAAGGGCCATTTCTCAGCTGCAGTCACTCCCCGGCGGCGACGTGAAGCTTCTCTGTGATGCGGTGGTTGAGAGCGTGAGGGAATTGACTGGTTATGATAGGGTGATGGTTTATAAGTTTCACGAGGATGAACATGGTGAGGTTGTGGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTACATTGGTTTGCATTATCCTGCTACTGACATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCACCTGTGAGGGTGGTTCAGGATGAGACTCTTGTGCAGCCTCTGTGTTTGGTTGGGTCCACGCTTCGTGCCCCTCATGGTTGCCATGCTCAGTACATGGCTAACATGGGCTCCATTGCTTCATTGGTTATGGCTGTTGTCATCAATGGGAGCGATGAGGATACGGTTGCAATTGGAGGCCGCAGCACCATGAGGCTGTGGGGTCTTGTTGTTTGCCATCACACTTCTGCTAGGTGCATCCCTTTTCCTCTTAGGTATGCTTGTGAGTTCCTCATGCAGGCCTTTGGGCTGCAATTGAATATGGAGCTTCAGCTGGCATCGCAGTCGTTGGAGAAGCGAGTCTTGAGGACGCAGACTCTGTTGTGTGACATGCTTCTTAGGGACTCTCCTACTGGCATTGTCACTCAGAGTCCTAGTATTATGGACTTGGTCAAGTGTGATGGAGCTGCTCTGTACTGTCAAGGGAACTACCACCCTTTAGGTGTCACCCCAACTGAGTCTCAGATAAGGGACATTATAGAGTGGTTGTTGGCCTTCCATGGTGATTCGACAGGTTTGAGTACTGATAGTTTGGCTGATGCTGGCTACCCTGGGGCTGCTTCACTTGGGGATGCAGTTTGTGGGATGGCTGTTGCTTATATCACGGAAAAGGATTTCCTTTTCTGGTTTAGATCTCATACGGCAAAAGAAATCAAATGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCCTTCAAGGCATTTTTGGAAGTGGTGAAGAGCCGTAGTTTGCCGTGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGAGACTCGTTTAAGGAGGCTGCTGAGCATTGTGATTCTAAGGCTGTTGTGCATTCCCATTTTGCAGAACTAGAGTTGCAAGGGGTAGATGAACTAAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTCGATGTTGATGGCCTCATAAATGGGTGGAATGCGAAGGTTTCAGAATTAACAGGACTCCCAGTTGAGGAGGCTATGGGGAAGTCATTGGTTCATGAAATTGTGTACAAGGAGTCTCAAGAAACTGCAGCCAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTACACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAGTTGTGATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGATAACGCATGTTGCTTAGAGTGGAACAATGCCATGGAAAAGCTTACTGGTTGGGGCCGTACGGATGTCATTGGAAAGATGTTGGTGGGAGAGGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATGCCATAACAAAGTTCATGATTGTTTTGCACAATGCGCTTGGTGGGCATGATACAGATAAATTCCCTTTTACATTTCTTGACCGGCATGGAAAGTATGTGCAAACTTTCTTGACTGCAAATAAGAGAGTTAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCCGAACTTCAACAAGCTATGAAGGTCCAGCGACAACAGGAAAAGAATTGCTTTGCTAGAATGAAAGAGTTGGCTTATATTTGTCAGGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACAGGCTTGACTGATGAGCAAAAGCAATTTCTCGATACTAGTGCAGCTTGTGAGAAGCAAATGTTAAAGATAATACGGGACGTTGATCTGGAAAGCATCGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGTAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTGTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATATCCAAGAATAAAGCAAATTTCGGATGGGCTCACTCTTCTTCATGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAGTTGGTTCAAGATATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAAATTCTGAAGTTAATGAATGGCGAAGTGCAATATATCAGGGAGGCAGAACGGTGCTACTTCTTTATTCTTCTTGAACTGCCTGTGACACGGAAAAGTTCTAAAAATGTTAATTAG 3417 0.4639 MASASRGGNASVSQQQVQSWRTTTKGSEEEKKRGDSMRKAIAQYTEDARLHAVFEQSGESFDYSQSVRVTAESVPEQQITAYLAKIQRGGFIQPFGSMIAVDEPSFRVLAYSDNARDMLGIAPQSVPSLEDDSSSSTLTFGTDVRSLFTHSSALLLEKAFAAREISLMNPIWIHSRSSGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAIRAISQLQSLPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDETLVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGSDEDTVAIGGRSTMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYCQGNYHPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKEAAEHCDSKAVVHSHFAELELQGVDELSSVAREMVRLIETATAPIFAVDVDGLINGWNAKVSELTGLPVEEAMGKSLVHEIVYKESQETAAKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNACCLEWNNAMEKLTGWGRTDVIGKMLVGEVFGSCCQLKGSDAITKFMIVLHNALGGHDTDKFPFTFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQAMKVQRQQEKNCFARMKELAYICQEVKNPLSGIRFTNSLLEATGLTDEQKQFLDTSAACEKQMLKIIRDVDLESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVYPRIKQISDGLTLLHAEFRMVCPGEGLPPELVQDMFHNSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFILLELPVTRKSSKNVN. 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04101 1138 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 403 IPR016132 -
Seca6g04101 1138 ProSiteProfiles PAS repeat profile. 763 815 IPR000014 -
Seca6g04101 1138 Gene3D - 418 591 IPR043150 -
Seca6g04101 1138 FunFam Phytochrome 967 1133 - -
Seca6g04101 1138 FunFam Phytochrome 418 548 - -
Seca6g04101 1138 PANTHER OS08G0260000 PROTEIN 76 966 - -
Seca6g04101 1138 CDD HisKA 904 960 IPR003661 GO:0000155|GO:0007165
Seca6g04101 1138 CDD PAS 640 747 IPR000014 -
Seca6g04101 1138 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Seca6g04101 1138 Pfam His Kinase A (phospho-acceptor) domain 908 968 IPR003661 GO:0000155|GO:0007165
Seca6g04101 1138 SUPERFAMILY GAF domain-like 213 410 - -
Seca6g04101 1138 SUPERFAMILY GAF domain-like 421 601 - -
Seca6g04101 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 880 IPR035965 -
Seca6g04101 1138 FunFam Phytochrome 776 884 - -
Seca6g04101 1138 PIRSF Phytochrome_conventional 17 1136 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Seca6g04101 1138 Gene3D PAS domain 85 336 - -
Seca6g04101 1138 Gene3D PAS domain 776 886 - -
Seca6g04101 1138 Gene3D - 968 1134 IPR036890 -
Seca6g04101 1138 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g04101 1138 CDD HATPase_Phy-like 1015 1127 IPR044767 -
Seca6g04101 1138 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 979 1125 IPR036890 -
Seca6g04101 1138 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 896 960 IPR036097 GO:0000155|GO:0007165
Seca6g04101 1138 FunFam Phytochrome 885 966 - -
Seca6g04101 1138 MobiDBLite consensus disorder prediction 1 37 - -
Seca6g04101 1138 ProSiteProfiles PAS repeat profile. 629 700 IPR000014 -
Seca6g04101 1138 SMART HKATPase_4 1016 1129 IPR003594 -
Seca6g04101 1138 PRINTS Phytochrome signature 443 463 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 651 666 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 528 547 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 148 170 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 745 765 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 632 648 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 725 742 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 561 579 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355|GO:0009584
Seca6g04101 1138 ProSiteProfiles Histidine kinase domain profile. 911 1131 IPR005467 -
Seca6g04101 1138 SMART gaf_1 233 423 IPR003018 GO:0005515
Seca6g04101 1138 Pfam PAS fold 763 882 IPR013767 GO:0006355
Seca6g04101 1138 Pfam PAS fold 632 747 IPR013767 GO:0006355
Seca6g04101 1138 NCBIfam PAS domain S-box protein 636 751 IPR000014 -
Seca6g04101 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 204 IPR035965 -
Seca6g04101 1138 Gene3D - 887 967 - -
Seca6g04101 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 636 744 IPR035965 -
Seca6g04101 1138 Pfam PAS fold 81 200 IPR013654 GO:0006355
Seca6g04101 1138 SMART pas_2 762 832 IPR000014 -
Seca6g04101 1138 SMART pas_2 631 698 IPR000014 -
Seca6g04101 1138 Pfam GAF domain 234 413 IPR003018 GO:0005515
Seca6g04101 1138 Gene3D - 214 574 IPR029016 -
Seca6g04101 1138 Pfam Phytochrome region 426 601 IPR013515 GO:0006355|GO:0009584
Seca6g04101 1138 CDD PAS 774 882 IPR000014 -
Seca6g04101 1138 FunFam Phytochrome 625 757 - -
Seca6g04101 1138 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1123 IPR003594 -
Seca6g04101 1138 Gene3D PAS domain 627 751 - -
Seca6g04101 1138 SMART HisKA_10 904 968 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04101 Seca-Chr6 108679371 108686255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04101 2 1129 Histidine Kinase Gene Family AT4G16250 73.164 0.0 1744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04101 K12121 - gmx:100799831 2031.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04101 6 108679371 108686255 Seca6g04101 6 108679371 108686255 ECH