Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04087 ATGGAAGACTTCCATTTCAGTGAATTCAGTATCAGAACAGTGGAGGACAAATATAGTTCATCTAATGATATTTTATGGGCTAAAAAGGTTCAATTTTCTGGAACAGAAGATCAGGCAGAGTCTGGAGGAATTGACTCCCTTTCCTCTAACTTTGGCTTCTTTCCAGATGATCCATCAGAAGAAGAAGGGTTCCTTCTATCCACTAACCAACACAAGTATCATCATCACCAACAACAACCATCATATCATGATTATGAACCATTGGATAACCTACGGTTTGACATGGTCTCTTCAACTTCACCACTCCAAACTGATGAACAATGTCCAACCATGGTTCCACCTTGTGACCCAACAAAGGACAATAAACACTCCACTCCTTTAGCCTCAGTTGAGATCTTGAAGAACTATGGCAAGGGCTTCAAGCGGTTATGTGATGATCATGAAGGAAAAATCCTGCATCCAGCTGTACACACAAATGAAATTGGGAGAAAGCTATCAACAGAAGATGTCATGAAGATAGCTGGAACAAGGTTCATTCAATCATCTTCACGATCAGAAGGTTTGCACTTCTTGGTTAATCATCCTTTTAGTTTTTCCTTCTCTGAACTCACTGATGAAGAGAAAGAGGATGTGGAACTTGCTGAGTCACTCTTGGCTTGTGCTGAGAAAGTTGGCTATCAACAGTTTGAACGCGCTAGTAAATTGCTGAGTCATTGTGAATCACTGTGTTCCAAAACAGGGAACCCTGTTAAGCGTGTGGTTCATTATTTTGCTGAAGCTCTTCGCCAAAAGATAGATAGTGAAACAGGAAGAGTTTCATCTAAGGATTTGCAAAAGATTGTGTCATTTGATCCTGAAGAGGAAAACAAGTATTTAAACCCCACTTTTTTTGTATTTTATGAAGTGCTTCCTTTCTGTAAGGTTACAGTGTTCACAGCAGTTCAAGCTATAATAGAAAATGTAACTGAGGCAAAGAAAATTCATGTTATTGATCTTGAAATCAGAAAGGGGGTACAATGGACAATCCTTATGCAAGCCCTTGAGTCAAGACATGAATGTCCAATTGAGCTTCTAAAGATAACAGCTATTGTAAGTGGAACCACTTCAAAGCTTATGATTGAAGACACTGGTGAGAGATTGAAGGATTTTGCACAGAGTTTGAACTTACCTTTCTCATTCAATATAGTTATGGTATCAGACATGCTACATCTCAAAGAAGATCTTTTTGAAATAGATCCTGAGGAAACAGTTACAGTTTACTCTCAGTTTGCACTTAGAAGCAAGATTCAACAATCAGACCAGCTTGAATCTCTCATGAGAGTGATTAGAACCATTAGTCCTGTAGTAATGGTGGTAGCTGAACTTGAGGCTAACCACAATTCTACATCTTTTGTGAACCGTTTCATTGAAGCTCTTTTCTTCTTCAGTGCATTCTTTGATTGTCTTGAGGTTTGTATGGAACGGGATGAGCAGAACCGAATGGATATAGAATCACTGTTCGGTCTTGGAATCAGGAATATGATGGGTGCAGAGGGAGCAGAAAGAAAGAGTAGGAGTGTAAAGATCGACGTGTGGAGAGCATTTTTCTCGCGCTTTGGAATGGTGGAGACAGAATTGAGCACAATATCTTTATTCCAAGCGGATCTTGTGGCTAAAAGATTTCCTTGTGGAAGTTATTGCACATTGGATATGAATGGGCATAGCCTTCTTATCGGGTGGAAGGGAACACCAATTAACTCTGTTTCTGTCTGGAAATTTATGTGA 1764 0.3951 MEDFHFSEFSIRTVEDKYSSSNDILWAKKVQFSGTEDQAESGGIDSLSSNFGFFPDDPSEEEGFLLSTNQHKYHHHQQQPSYHDYEPLDNLRFDMVSSTSPLQTDEQCPTMVPPCDPTKDNKHSTPLASVEILKNYGKGFKRLCDDHEGKILHPAVHTNEIGRKLSTEDVMKIAGTRFIQSSSRSEGLHFLVNHPFSFSFSELTDEEKEDVELAESLLACAEKVGYQQFERASKLLSHCESLCSKTGNPVKRVVHYFAEALRQKIDSETGRVSSKDLQKIVSFDPEEENKYLNPTFFVFYEVLPFCKVTVFTAVQAIIENVTEAKKIHVIDLEIRKGVQWTILMQALESRHECPIELLKITAIVSGTTSKLMIEDTGERLKDFAQSLNLPFSFNIVMVSDMLHLKEDLFEIDPEETVTVYSQFALRSKIQQSDQLESLMRVIRTISPVVMVVAELEANHNSTSFVNRFIEALFFFSAFFDCLEVCMERDEQNRMDIESLFGLGIRNMMGAEGAERKSRSVKIDVWRAFFSRFGMVETELSTISLFQADLVAKRFPCGSYCTLDMNGHSLLIGWKGTPINSVSVWKFM. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04087 587 Pfam GRAS domain family 214 585 IPR005202 -
Seca6g04087 587 ProSiteProfiles GRAS family profile. 204 585 IPR005202 -
Seca6g04087 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 181 575 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04087 Seca-Chr6 108580592 108582355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04087 203 586 GRAS Transcription Factor Family AT3G03450 31.969 1.70e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca6g04087 GRAS 3.3e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04087 - - gmx:100818523 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04087 6 108580592 108582355 Seca6g04087 6 108580592 108582355 ECH