Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04084 ATGTTAATAGAGATTAGATTTTGGTTGAAGATTCATTCAGAACTTAATCCAAACAAAGTTATCCTAAGGGACCCTGCTGGCTTTACTTTTAATGTTTCTATAAGTATCGATAGGTGTAATAGGGCTGGATTTGTTTATGGAGTTGAAAACATCATTAGGCGCTATAACTTGAAGGAGAGTTACTGGGTGTTATGTACATATAAAGGGAACATTGAGTTTGACATTAGATTAGTGACTGGATCATTGGAGGTCAATTATCCAAGGGTTGAGAGGGATGCAGATGTTGATGATAATGCTGTGGAGTATGAGGAGGATCCTAAGGAGGATAAGGATGATTCTGAGGAGCCCATATTTTTATGGGAAGTTACATTGACAGCGCCAGCTGCATCCGGTTCTAATGCTTTGCTGATACCAGCTAGGATTGTGAGGGAGATATTGAACAAGGATCAGAAAGTTGTTACTCTTATAGATGAGAGTGGTAGTTTAATTCCATGCAAGTTGCTGAATCCTAAAAGACGATCCAGTGAGCGGTACCTATCCGGTGGTTGGTATGACTTTATTCGGGGGGAAAAATTGAAGGTTGGGGATAAGATTAGATTTTACACCGATGATAGCATGAAAACTGTATCTGCGGTTGTGGACCGCACTTGA 651 0.4009 MLIEIRFWLKIHSELNPNKVILRDPAGFTFNVSISIDRCNRAGFVYGVENIIRRYNLKESYWVLCTYKGNIEFDIRLVTGSLEVNYPRVERDADVDDNAVEYEEDPKEDKDDSEEPIFLWEVTLTAPAASGSNALLIPARIVREILNKDQKVVTLIDESGSLIPCKLLNPKRRSSERYLSGGWYDFIRGEKLKVGDKIRFYTDDSMKTVSAVVDRT. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04084 216 SUPERFAMILY DNA-binding pseudobarrel domain 116 212 IPR015300 -
Seca6g04084 216 ProSiteProfiles B3 DNA-binding domain profile. 120 216 IPR003340 GO:0003677
Seca6g04084 216 Gene3D - 100 214 IPR015300 -
Seca6g04084 216 SMART B3_2 120 216 IPR003340 GO:0003677
Seca6g04084 216 CDD B3_DNA 116 201 IPR003340 GO:0003677
Seca6g04084 216 Pfam B3 DNA binding domain 121 206 IPR003340 GO:0003677
Seca6g04084 216 SUPERFAMILY DNA-binding pseudobarrel domain 10 76 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04084 Seca-Chr6 108566384 108567663 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca6g04084 B3 7.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04084 - - mtr:11425977 55.0694