Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04083 ATGGCAGATTTTAAAAATCCTTTGCAGATTAATTCTCTTGAAATGGTGCTGGTGGATGAACAGGAACACAGAATCCATGCTTATGTCAAACGTGCTCTTATTCGAAGTTTCGAAAATAGACTTAAGGAAGGTTCTTCCTATGTTTTGGAGAATCTTTTAGTAGCAGAGAATAAAATGAAGTTCAAAACCACAACTAAGAAGTTTAAGCTAGGTTTTATGCAACTTACAAGAATTGCTGAAACTCATATTGATACCATTCCAGTCAACCATTTTGAGTTTGTTCCTTTTTCTGAAATTGTCTCCGGTTCAGATGAGTTTATCTTGATGGATGTCATTGGACACGTAGTTCAACGATCTGATGTTAAGGAATCAAAAACCAGTAAGCTTTTGGAAGTCATTCTTGAAGATTTAGACAACAATCAAATGGTCTGTACTTTATGGGGTGATTTTGCAGACCAAATGGAGAGTTACCTTGCTAATGATACATCTAACAATGTTGTTATTGTTATACTCCAATTTTGCAAGCGTAATTTCTTCAATGGCAAAATGGGTGTGTCTAATGCTTATAATGGTACTAAGCTGTTGATTAACCCTAATATCAAGCATGACTTAGAGTATAGAGAAAGGCTGAATAATTTGGAGGTTGATATTAGTCAAGTTAGCCATGCTTCTGGATACAGCTCTCTCTCTGTTAGCGAAGACATACTTCAGACACAAAGGATGACCATATCTGACATTGTTGACTCTTTAAATCCATGCTTATGTTCTTTGCTGGGAAAAATAATTGAGATTGATGTGGAGAAGGGATGGTATTATGACTCATGTAACAAATGTGCGAGGAAGGTCGTAAAAGTAGGGAATAAATTTTTCTGCGAGCACTGTGAGAAGATGATGGTTGGTGTCACTAGATTTATGGTGAATGTTAATATAATTGACGACACTGGATCGGCCAGCTTTGTCATGTTTAATCATGCTGTTAATCAATTCTTGGGGAAGTCAGCTGCAGATTTAGTTGAACAAGACAATAAGGCAAAATTTGTTGTTGGTTATCCACCTGATTTTGAAGCTTTTCTGAACAAAACAATGTTATTCAAAGTGGAGATTTCCCAAGCAAACCTTTATCAAAATTGGCATGCTTATACTATTAAGAAGTTTACTGATGATAAGGATACAATTGATCAGTTTAAGACATTACACTCAATTAAGGATGGTGAGATGGAGGTGAAGGCAAACCCTTCTCCTCAAATTGATGACAATATGAAGAATGAGATATACAATGTTGAGGAATCCCAGGTGGAACTTAAAGAAGGACTCTCACAGGTGGTCTCCAGTGGTGCAAACGATGACACTCCTATGAACAAATTTGCTAGAAAAAGGGAAGCTCCTCCAATTAATTTGTGCTCTATTCTTGATGAGGAAGAAACTCAGGCATCCAGCACTAAGATGCCCAAGTTATTGAAAGTGAAACAGGAACCAGAAAAGTGA 1485 0.3677 MADFKNPLQINSLEMVLVDEQEHRIHAYVKRALIRSFENRLKEGSSYVLENLLVAENKMKFKTTTKKFKLGFMQLTRIAETHIDTIPVNHFEFVPFSEIVSGSDEFILMDVIGHVVQRSDVKESKTSKLLEVILEDLDNNQMVCTLWGDFADQMESYLANDTSNNVVIVILQFCKRNFFNGKMGVSNAYNGTKLLINPNIKHDLEYRERLNNLEVDISQVSHASGYSSLSVSEDILQTQRMTISDIVDSLNPCLCSLLGKIIEIDVEKGWYYDSCNKCARKVVKVGNKFFCEHCEKMMVGVTRFMVNVNIIDDTGSASFVMFNHAVNQFLGKSAADLVEQDNKAKFVVGYPPDFEAFLNKTMLFKVEISQANLYQNWHAYTIKKFTDDKDTIDQFKTLHSIKDGEMEVKANPSPQIDDNMKNEIYNVEESQVELKEGLSQVVSSGANDDTPMNKFARKREAPPINLCSILDEEETQASSTKMPKLLKVKQEPEK. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04083 494 CDD RPA1_DBD_B_like 110 210 - -
Seca6g04083 494 SUPERFAMILY Nucleic acid-binding proteins 90 212 IPR012340 -
Seca6g04083 494 CDD RPA1_DBD_C 255 373 IPR047192 -
Seca6g04083 494 Gene3D - 1 80 IPR012340 -
Seca6g04083 494 MobiDBLite consensus disorder prediction 472 494 - -
Seca6g04083 494 Pfam Domain of unknown function DUF223 14 102 IPR003871 -
Seca6g04083 494 Pfam Replication factor-A C terminal domain 259 371 IPR013955 -
Seca6g04083 494 SUPERFAMILY Nucleic acid-binding proteins 238 383 IPR012340 -
Seca6g04083 494 CDD RPA1_DBD_A_like 3 78 - -
Seca6g04083 494 SUPERFAMILY Nucleic acid-binding proteins 12 80 IPR012340 -
Seca6g04083 494 Gene3D - 85 219 IPR012340 -
Seca6g04083 494 Gene3D - 227 405 IPR012340 -
Seca6g04083 494 PANTHER OS03G0429900 PROTEIN 5 391 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04083 Seca-Chr6 108562299 108565252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04083 17 370 Core DNA Replication Machinery Family AT5G08020 23.056 1.30e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04083 - - mtr:112422829 351.288