Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04063 ATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTGTAATCATAAATATTTCACGATCCATGTCAAGCCAGTGCATTTGCCCAAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGGCACAACTGGAAAAAGAAAAATGACGGGAAAACTGTCAAAGAAGCCCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGCCAAGATAATACGGGCTTTGTTCGTAGATGTTACTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAGGAGATGCAAGGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGGCTCACCGTTTATTTTGTCAGAAGACTTAGAATCTGGGACCAACAGTGCTTATACTGGTGGGCTTAATGGAAATTTAACAGTCAAAAGTCATGAACTAAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTGGTTTCAAATGTTAACACCTCTACTATACCTAATGGAGGCAATGAACCATGTTTATATCAAGAAAATCAAAGTTTACTGAATGGAAGCTTTGGCAACGTTGCCAGTAATCCTTCTGCAGAAATTCATTCTTTTGTGAATCAGGGCTTGCAAAGTCAGGATCAGGGCTTGCAAAGTCAGGACAGCTTCGGAAAGTGGATAAACAACATGATATCTGATACACCATGTTCTGTAGATGAGTCAGCTCTTGAATCATCAATTTCTTCATCTGTTCATGAACCATATTCATCACTGGTGGTGGATAATCAGCGATCTTCTTTGCCAGAACAAGTATTCAATCTCACCGAGGTGTCCCCTGTCTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGTTTTTTTAATCATGATTATCAACACATTGCAAAGTCCAATCTACTGTGTGTCTGTGGGGATGTAAGTGTTCCTGTAGAAATTGTTCAGGCTGGGGTTTACCGATGCTGGGTATTACCACATTCTCCTGGATTCGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGCACACCTATTTTGCATGATCCTGCTGCTTCAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGACGAGACTTGCTCATTTGCTCTTTACTACACAAAAGAACCTTGATATTTACTCTAGTAAAGTATCACCTAATGCACTGGAAGAGGCTAAAAAATTTGCCCTCAAAACATCATATATTTCCAAAAGTTGGCAGTACCTGATGAAGTCAATTGGTGACAATACAACTCCGTTTTCACAAGCAAAAGATGACTTGTTTGAAATTGCATTGAAAAACAAACTAAAGGAATGGCTTTTGGAACGGATTCTCTTAGGTTGTAAGAGTACTGAGTATGATGCACAAGGCCAAGGAATAATTCATTTGTGCACAGTTTTGGGATATACTTGGGCTATTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAATGGAGAAGATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCAAACTTAGTCACGGACCCAACTCCAGAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTATAATAAGGGATATGATGGCTTAGCAGCTTATCTTTCAGAGAAGTCTCTGGTTGAGCAGTTTAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACATCTGATCCAGTAAATTCTGAGAACCTTACTGAGGACCAGCTGTACCTAAAGGATACATTGGCAGCTTACCGAATAACTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCATTAAAATTGCGATCTAAGGCAATTGAATTTTGTAACCCAGAGGAAGAAGCACGCAAAATAGTAGCAGCAATGAAGATTCAACATGCCTTCCGCAGCTATGAAACCAGGAAAATGATGACAGCTGCTGCGCGGATCCAGCATAGATTCCGTACATGGAAATATCGTAGAGAATTTCTCCATATGCGACGTCAGGCTATTAGAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGGAAACAATATCGCAAAATCATATGGTCTGTTGGGGTGCTTGAGAAAGCAATCCTGCGTTGGCGTTTAAAGAGAAAAGGCTTCCGCGGCCTGCAGGTGAATCCTGTCCAAGAAATCAAAGATGAGAAGCAGGAAAGTGATGTAGAAGAGGATTTCTTCCGAACTGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTAGTACGTGTCCAGGCCATGTTCCGTTCCAAGAAAGCACAACAAGAGTATACCAGGATGAAGATGGCACATAGTCAAGTGAAGCTGGAACTGGAATTAGAAGAACTACTCAATTCTGAAGTTGACATGTTAACAACGCAGACATCCTAG 2544 0.4147 MEEAKSRWLRPNEIHAILCNHKYFTIHVKPVHLPKSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNTGFVRRCYWLLDKSLEHIVLVHYRETQEMQGSPVTPVNSNSSSGSPFILSEDLESGTNSAYTGGLNGNLTVKSHELRLHEINTLEWDDLVSNVNTSTIPNGGNEPCLYQENQSLLNGSFGNVASNPSAEIHSFVNQGLQSQDQGLQSQDSFGKWINNMISDTPCSVDESALESSISSSVHEPYSSLVVDNQRSSLPEQVFNLTEVSPVWASSTEKTKVLVTGFFNHDYQHIAKSNLLCVCGDVSVPVEIVQAGVYRCWVLPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPAASMEEKYNWNEFRLQTRLAHLLFTTQKNLDIYSSKVSPNALEEAKKFALKTSYISKSWQYLMKSIGDNTTPFSQAKDDLFEIALKNKLKEWLLERILLGCKSTEYDAQGQGIIHLCTVLGYTWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSCGARPNLVTDPTPENPGGCTAADLAYNKGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTSDPVNSENLTEDQLYLKDTLAAYRITAEAAARIQAAFREHSLKLRSKAIEFCNPEEEARKIVAAMKIQHAFRSYETRKMMTAAARIQHRFRTWKYRREFLHMRRQAIRIQAAFRGFQVRKQYRKIIWSVGVLEKAILRWRLKRKGFRGLQVNPVQEIKDEKQESDVEEDFFRTGRKQAEERVERSVVRVQAMFRSKKAQQEYTRMKMAHSQVKLELELEELLNSEVDMLTTQTS. 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04063 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 742 IPR027417 -
Seca6g04063 847 Gene3D - 691 739 - -
Seca6g04063 847 ProSiteProfiles IQ motif profile. 692 718 IPR000048 GO:0005515
Seca6g04063 847 ProSiteProfiles IQ motif profile. 796 824 IPR000048 GO:0005515
Seca6g04063 847 Gene3D - 455 597 IPR036770 -
Seca6g04063 847 ProSiteProfiles CG-1 DNA-binding domain profile. 1 123 IPR005559 GO:0003677
Seca6g04063 847 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 824 - -
Seca6g04063 847 SMART iq_5 714 736 IPR000048 GO:0005515
Seca6g04063 847 SMART iq_5 672 694 IPR000048 GO:0005515
Seca6g04063 847 SMART iq_5 794 816 IPR000048 GO:0005515
Seca6g04063 847 FunFam Calmodulin-binding transcription activator 5 287 383 - -
Seca6g04063 847 Pfam Ankyrin repeats (3 copies) 470 557 IPR002110 GO:0005515
Seca6g04063 847 SUPERFAMILY E set domains 292 379 IPR014756 -
Seca6g04063 847 ProSiteProfiles Ankyrin repeat region circular profile. 528 556 - -
Seca6g04063 847 FunFam Calmodulin-binding transcription activator 2 691 739 - -
Seca6g04063 847 SMART ANK_2a 567 598 IPR002110 GO:0005515
Seca6g04063 847 SMART ANK_2a 528 557 IPR002110 GO:0005515
Seca6g04063 847 Pfam CG-1 domain 3 116 IPR005559 GO:0003677
Seca6g04063 847 ProSiteProfiles Ankyrin repeat profile. 528 560 IPR002110 GO:0005515
Seca6g04063 847 SMART CG_1_2 1 118 IPR005559 GO:0003677
Seca6g04063 847 Pfam IQ calmodulin-binding motif 717 736 IPR000048 GO:0005515
Seca6g04063 847 ProSiteProfiles IQ motif profile. 715 739 IPR000048 GO:0005515
Seca6g04063 847 SUPERFAMILY Ankyrin repeat 466 590 IPR036770 -
Seca6g04063 847 FunFam calmodulin-binding transcription activator 5 458 598 - -
Seca6g04063 847 ProSiteProfiles IQ motif profile. 676 702 IPR000048 GO:0005515
Seca6g04063 847 Gene3D Immunoglobulins 287 382 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04063 Seca-Chr6 108372445 108381565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04063 1 828 CAMTA Transcription Factor Family AT3G16940 58.993 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca6g04063 CG-1 9.4e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04063 K21596 - gmx:100819198 1330.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04063 6 108372445 108381565 Seca6g04063 6 108372445 108381565 ECH
Seca12g00399 12 3476227 3485664 Seca6g04063 6 108372445 108381565 PCT