Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04055 ATGGGGAGAGCTCCTTGCTGTGAGAAAGTTGGATTGAGAAAAGGAAGATGGAGTGCTGAAGAGGATAAGATCTTAACCGATTACATCCACCAATATGGTGAAGGATCTTGGAGGTCCTTGCCCAAAAATGCAGGTATATATTTAATTAATTGTTTGTTAAGGTGTGGGAAGAGTTGCAGACTAAGATGGATTAACTATTTGAGGGGAGACGTGAAGAGAGGGAACATCACTTCTCAAGAGGAACAGATCATCGTCAAGTTGCATGCTGCTCTTGGTAATAGGTGGTCTGTGATAGCAGCACATTTACCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAACTCTCATTTGAGGAGAAAGATTTACTGTTTCATGAGATCATTAAATGAGTCTCCACCAATTGACATGGCTACTGTAAAAGTAGCTGCTGCTACATCCAAGAGAAGAGGCAGAGGAGGGACAAGAATTTATAAGCCTGCATCATCCTTGGAAGAGGACAAGAAGAAATTTGAATCAATAGTGCCTAAAATGGAACCAACTTATTCACAAAGTTGTAATAAAAGAGAAGCTGAAGAAATTTCGATGATGGATGATGCTTATTTTGAAATGGATCAGGGCCACACAGCTGATGGAGATATTAAGGGCTTAGGACCATATCAATGGTCAGTTGATGAAATTATGAAACTTAGTGACATGTTTGAAAATGGGGTAGGGAATTTAACCCTTCAAGAGGAGCCTAATGGAAATGACTACTGTGGGCAGATGCAGATAATGGGAACAAGAACTCAAGAGGAGAGCAAAAGTGGTGTTTGGAGCTCATCAAATGCAGAGAGTACTGGAGATCAATGGTACACTAGTTGCTCCTCAGTGAATTCTACCATTAATTATCAATGGTGTGATTGGGATTTGGCAGGTAGTGTTCAATCCCATAATCACTGGGACCCTTGTGAAGAAGACCAAATAATGAATTGCTTGTGGGGTGCTAGCATTGCTGGAATAAATGACTTTCATCAATAA 1020 0.402 MGRAPCCEKVGLRKGRWSAEEDKILTDYIHQYGEGSWRSLPKNAGIYLINCLLRCGKSCRLRWINYLRGDVKRGNITSQEEQIIVKLHAALGNRWSVIAAHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESPPIDMATVKVAAATSKRRGRGGTRIYKPASSLEEDKKKFESIVPKMEPTYSQSCNKREAEEISMMDDAYFEMDQGHTADGDIKGLGPYQWSVDEIMKLSDMFENGVGNLTLQEEPNGNDYCGQMQIMGTRTQEESKSGVWSSSNAESTGDQWYTSCSSVNSTINYQWCDWDLAGSVQSHNHWDPCEEDQIMNCLWGASIAGINDFHQ. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04055 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 67 IPR017930 -
Seca6g04055 339 CDD SANT 77 118 IPR001005 -
Seca6g04055 339 Gene3D - 11 73 - -
Seca6g04055 339 FunFam MYB-related transcription factor 13 72 - -
Seca6g04055 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Seca6g04055 339 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Seca6g04055 339 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
Seca6g04055 339 Pfam Myb-like DNA-binding domain 14 67 IPR001005 -
Seca6g04055 339 CDD SANT 16 67 IPR001005 -
Seca6g04055 339 Gene3D - 77 122 - -
Seca6g04055 339 SMART sant 13 69 IPR001005 -
Seca6g04055 339 SMART sant 72 120 IPR001005 -
Seca6g04055 339 SUPERFAMILY Homeodomain-like 11 114 IPR009057 -
Seca6g04055 339 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 189 - -
Seca6g04055 339 ProSiteProfiles Myb-like domain profile. 9 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04055 Seca-Chr6 108280021 108283916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04055 1 315 MYB Transcription Factor Family AT5G49330 42.571 1.72e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g04055 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04055 K09422 - gmx:100819041 411.764