Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04052 ATGGGTGCAGCAGCAGCACCAGTGATAGCGAAGGCCCTTAGGAGTAGTATTTTCAGATGTCACTTCTGTTGCCGTGAATTTTCCAATTCACAAGCTTTGGGAGGACATCAAAATGCGCACAGGAGAGAACGGCAAAGAGCACACTTTTTTCCGCTTCTTCCCCATCATCAACGCTTCATAAAAACTTCTTCATCTTCCCCTTATGGCTATCCTATCATGGCTTCTCCTCCACGTGGGTCAGTAGCACATCATGAGGAATTACCTTGTGGGTTCCATCCACAACATGAGGGACCTCTTTTTATGAGAGCAGCAGGCACGTCCAGAAAAATTGTGCCTTTCAAACAAGTACAGAACCTTGATGGTGATGTTGATCTTAACTTGACTCTTGCTAGTAGTATTATACCCATTCCCCCCTCCAATTCCACCAGGGACGAGGACGACAATATATAA 450 0.4556 MGAAAAPVIAKALRSSIFRCHFCCREFSNSQALGGHQNAHRRERQRAHFFPLLPHHQRFIKTSSSSPYGYPIMASPPRGSVAHHEELPCGFHPQHEGPLFMRAAGTSRKIVPFKQVQNLDGDVDLNLTLASSIIPIPPSNSTRDEDDNI. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04052 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Seca6g04052 149 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Seca6g04052 149 PANTHER ZINC FINGER PROTEIN 5 18 95 IPR044299 GO:0010090
Seca6g04052 149 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04052 Seca-Chr6 108250999 108251448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04052 7 59 C2H2 Transcription Factor Family AT1G67030 50.000 8.77e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04052 - - tpra:123887517 108.612