Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04051 ATGTCAGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTGTTGAGGAAACACCAGAGGACACAATTTTGTCAAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGGTTCATCTCTCAAGAAGCTGCTTATGAATTTTACTGCAGTTTTGCTAAACAATGTGGCTTTTCTATTAGACGACACCGCACTCGAGGGAAAGATGGGGTTGGCCGGGGAGTTACAAGGAGGGACTTTACTTGCCATCGTGGTGGATATCCCCAGACTAAACCTTCTGATGATGGGAAGATACAAAGGAACCGCAAATCGTCTCGCTGTGGTTGCCAAGCATACCTGCGCATTGTAAAAAGGGCAGATTTTGATGTCCCTGAATGGCGCGTTACTGGTTTTAGGAACATCCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATACTGCCCAATATCTCCTGATGACAAGAGTCGGATATGCATGTTTGCTAAAGCTGGAATGTCTGTAAGGCAAATGTTAAGATTGATGGAGCTAGAGAAAGGCATTAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAATTTGTTGCAGTCTTTCAGAAATGTTGATAGAGATAATGATGCTATTGATCTGATCGCTATGTGCAAGAAATTAAAAGATGAAAATCACAACTTCAAGTATGAATTCAAGATAGACAATAATAACAGGCTTGAGCATATTGCATGGTCCTATGGCTCATCCATTCAAACATATGAGGCATTTGGAGATGCTGTTGTTTTTGATACAACCTATCGAGTGGAGGCTTATGACATGCTGTTGGGAATTTGGCTTGGAATGGACAACAATGGAATGATATGTTTCTTTAGTTGTGCACTTCTACGAGATGAAAATATGCAGTCTTTTTCATGGGCTCTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCACAAACAATATTAACTGATCATAACACGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCTGAAACTAAACATGCCTTTTGTATATGGCATATTCTTTTTAAGTTCTCTGACTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAAGAAGGCTGGAGGCAAATGGTTGATAAATATGGACTCCACGCAAATAAACATATTATTAGCCTATATTCATTAAGGATGTTTTGGGCTTTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGTACATGTCAGTCTGAGTTCATTAATGCTTTCATCCAACGGTTCTTGAGTGCCCAATCTCAACCAGATCGCTTTTTAGAGCAAGTCTGTGATATATATAATCTATTTCCTTTAGTTTTATTTATTGGTATGCTATGCCATATTTAA 1476 0.397 MSEGTSLVLESSENGTDLSQDDIGTVEETPEDTILSRQTSVNLVPFIGQRFISQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQTKPSDDGKIQRNRKSSRCGCQAYLRIVKRADFDVPEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKKLKDENHNFKYEFKIDNNNRLEHIAWSYGSSIQTYEAFGDAVVFDTTYRVEAYDMLLGIWLGMDNNGMICFFSCALLRDENMQSFSWALKAFLGFMKGKAPQTILTDHNTWLKEAIAVEMPETKHAFCIWHILFKFSDWFSLLLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDKYGLHANKHIISLYSLRMFWALPFLRRYFFAGLTSTCQSEFINAFIQRFLSAQSQPDRFLEQVCDIYNLFPLVLFIGMLCHI. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04051 491 MobiDBLite consensus disorder prediction 1 29 - -
Seca6g04051 491 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 472 IPR031052 GO:0006355
Seca6g04051 491 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g04051 491 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Seca6g04051 491 Pfam MULE transposase domain 275 366 IPR018289 -
Seca6g04051 491 MobiDBLite consensus disorder prediction 94 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04051 Seca-Chr6 108213049 108218237 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g04051 MULE 6.8e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04051 - - gmx:100778434 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04051 6 108213049 108218237 Seca6g04051 6 108213049 108218237 ECH