Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04048 ATGGTTGCTGGGGTCTGGTCGGATGATAATAGCCAGCAACTTGAAGCAACTACGCAATTTCGGAAGCTGCTTTCGATTGAGCGCAGCCCTCCGATTGAGGAAGTTATTCAATCTGGCGTTGTGCCTCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCTTGGGCTCTCACAAACATAGCATCGGGAACTTCTGAGAACACTAAGTTGAATGAGCATGCAAAACTTTCAATGTTGAGAAATGCCACATGGACCCTGTCAAATTTTTGCAGGGGCAAGCCTCAGCCTCCATTTGAACAGGTGAGGCCAGCACTGCCAGCTCTCGAGCGATTGGTTTATTCCAATGATGAAGAGGTTCTGACAGATGCATGCTGGGCACTATCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTGGCAGACTGGTGCAGCTCCTTATGCACTCATCTCCTTCAGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTTACTGGAGATGATATTCAGACTCAGGCTATTATCAATCATGGTGCACTCCCATGCCTTTTGAGCCTTCTCACACATAATCATAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGCAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTTGTAAATCTTCTTCAAAATGCCGAGTTTGACATTAAAAAGGAAGCTGCGTGGGCAATCTCAAATGCTACATCTGGTGGTACCCATGAGCAGATCAAGTATTTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTATGCCCCGACCCAAGAATTGTTACTGTCTGTCTAGAAGGTCTTGAGAATATTCTGAAGGTCGGGGAAGCCGATAAGAGCTTAGTTTTGTTGCAGTTAGAGAGTCTTCCTGCGATGGTTGCTGGGGTCTGGTCGGATGATAATAGCCAGCAACTTGAAGCAACTACGCAATTTCGGAAGCTGCTTTCGATTGAGCGCAGCCCTCCCATTGAGGAAGTTATTCAATCTGGCGTTGTGCCTCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCTTGGGCTCTCACAAACATAGCATCGGGAACTTCTGAGAACACTAAGGTGGTAATTGATCATGGAGCAGTTCCGATATTTGTCAAGCTACTTAGTTCACCTAGTGATGATGTTCGGGAGCAGGCTGTTTGGGCATTGGGAAATGTTGCCGGTGACTCCCCTAGGTGTCGTGATCTTGTTCTCAGCCATGGTGCTCTGATTCCACTGTTAGCCCAGTTGAATGAGCATGCAAAACTTTCAATGTTGAGAAATGCCACATGGACCCTGTCAAACTTTTGCAGGGGCAAGCCTCAGCCTCCATTTGAACAGGTGAGGCCAGCACTGCCAGCTCTCGAGCGATTGGTTTATTCCAATGATGAAGAGGTTCTGACAGATGCATGCTGGGCACTATCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTGGCAGACTGGTGCAGCTCCTTATGCACTCATCTCCTTCAGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTTACGGGAGATGATATTCAGACTCAGGCTATTATCAATCATGGTGCACTCCCATGCCTTTTGAGCCTTCTCACACATAATCATAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGCAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCCGAGTTTGACATTAAAAAGGAAGCTGCGTGGGCAATCTCAAATGCTACATCTGGTGGTACCCATGAGCAGATCAAGTATTTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCCGACCCAAGAATTGTTACTGTCTGTCTAGAAGGTCTTGAGAATATTCTGAAGGTCGGGGAAGGCGAGAAGAGCTTGGGCAACACTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGATTGGAAAAAATTGAAAACCTGCAGAGTCATGACAACAACGAAATATATGAGAAGGCTGTTAAAATTCTTGAGACATATTGGTTGGAAGACGAAGATGAGACACTACCATCAGGCGATGGTGCTCAACCTGGTTTTAATTTTGGAAGCAACGAGCTTCCGGTCCCATCCGGTGGATTCAACTTCAGTTGA 2343 0.4558 MVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVYSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLMHSSPSVLIPALRTVGNIVTGDDIQTQAIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKSLVLLQLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVYSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLMHSSPSVLIPALRTVGNIVTGDDIQTQAIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEGEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGAQPGFNFGSNELPVPSGGFNFS. 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 237 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 483 522 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 355 396 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 609 649 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 183 224 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 524 564 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 398 438 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 269 309 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 141 181 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 439 481 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 28 69 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 226 266 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 100 139 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 652 692 IPR000225 GO:0005515
Seca6g04048 780 SMART arm_5 566 607 IPR000225 GO:0005515
Seca6g04048 780 Gene3D - 322 746 IPR011989 -
Seca6g04048 780 Gene3D - 1 321 IPR011989 -
Seca6g04048 780 Pfam Atypical Arm repeat 707 751 IPR032413 -
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 653 690 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 609 648 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 440 481 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 111 138 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 270 307 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 142 180 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 356 396 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 186 224 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 29 69 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 494 521 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 569 607 IPR000225 GO:0005515
Seca6g04048 780 Pfam Armadillo/beta-catenin-like repeat 525 563 IPR000225 GO:0005515
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 77 IPR000225 GO:0005515
Seca6g04048 780 FunFam Importin subunit alpha 324 746 - -
Seca6g04048 780 MobiDBLite consensus disorder prediction 751 780 - -
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Seca6g04048 780 SUPERFAMILY ARM repeat 3 315 IPR016024 -
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 110 152 IPR000225 GO:0005515
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 620 648 IPR000225 GO:0005515
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 577 620 IPR000225 GO:0005515
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 409 IPR000225 GO:0005515
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 265 IPR000225 GO:0005515
Seca6g04048 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Seca6g04048 780 PANTHER IMPORTIN ALPHA 329 749 - -
Seca6g04048 780 FunFam Importin subunit alpha 76 323 - -
Seca6g04048 780 SUPERFAMILY ARM repeat 317 751 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04048 Seca-Chr6 108188214 108198708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04048 381 641 U-box Gene Family AT3G46510 25.191 2.21e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04048 K15042 - gmx:100808498 897.886