Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04045 ATGGCCTCGCACGTGCATACTTGTTGCTGCTTCTTCTTCTTCACCGTCGCCGTCTTATCCATCTTCGCCGCAGCGCCTTCGATGTCTCAGCCGCAAACCGCCGATTCCTGCAACGGAATATTCCTCTCCTACGCCTACACCGGCGGCGCGCGGCTGCCGCCGAACATATCCGACCCGGCGCAGCAACCGTACCGATTCGAGTCGAGGCTGACGGTTCTCAACAACGGGCTGGAGGAGCTAAAGTCTTGGAGAGTGTTCGTGGGATTTCAGCACAACGAGTGGTTAGTGTCTGTGTCCAACGCCGTGCTCGCCGACGGCACGAGCATCCCCGGTGCCGTCGGAAACGGCACCGTTTTCGCTGGTTCCACCGTGACCGATCTCAAGACAGCAGCGGCGACTGCAGGGGACCTGAGCCAGATGCAGGTTCGGGTGGAACTGTTAGGGACCCTGTTTGGAGTGGCGCCTCCCAATGTGCCTATGCCTTCCAACATAAGCCTCGCCAACGATGGTTTCGTTTGTGGTCAACCCACTCGTCAAGGGAACAATGAGACTCATGTCTGTTGCACAAGTGATCCCAGTTTCAAAACAAACATAGCCAGAGATGAAGAGTTCCTGCCACGACAGAATGGTGATCTTACCATTATGTATGATGTGATCAAAGCTTATGATTCCAATTACTGGGCAGAGGTTACAATTGCAAACCACAACCCTCTTGGTCGTCTTGATAACTGGAGATTAAGCTGGGACTGGGACAATGATGAGTTTATACACACAATGAAAGGTGCTTATCCATCTGTTGTGGATTCTTCTGACTGTGTATTTGGTTCACAAGGTACATTCTACAAGGAACTTGATTTTTCCAACGTATTGAATTGTGAAAAAAGGCCAACCATCATTGATCTCCCTCCAACAAGGTTCAATGATTCAGTCCTTGGTAAAGTCCCATTTTGCTGCCGGAATGGTACTATATTGCCACCATCAATGGACCCCAGCAAGTCTGTTTCAAGGTTCCAATTACAGGTCTTCAAAATGCCACCAAACGTTAACCGTTCCCACCTTACACCACCACATAACTGGGAGATAAGAGGTGCTACACTCAACCCTGATTACCAATGTGGCACCCCAATCCGGGTTAGTCCTACTGAATCACCTGACCAAACAGGCTTACCATCAAACATATCTGCAATTGCTAGTTGGCAGGTTGTGTGCAACATAACAAAGGGAAAAAGTGCATCACCTAAATGTTGTGTCTCATTTTCAGCCTATTACAATGAATCAGTTATTCCTTGCAACACATGTGCATGTGGATGCCCCAGGAATCCAGAGAGAACATGTAGTACTGTTGCACCAGCTATGTGGCTTCCACCAGAGGCACTTCTTGTTCCTTTTGAGAATCGAAGTAAAATGGCTGTTGATTGGGCTAGTTTGAAACATCTTCAAGTGCCTAACCCTATGCCTTGTGGTGACAATTGTGGTGTGAGCATAAACTGGCATGTATATACAGATTACCGTAAAGGTTGGACAGCAAGGATCACAATTTTTAACTGGGATGAGACAGATTTTGCAGACTGGTTTGCTGCAGTGCAATTGGACAAAGCTGCAGCAGGTTTTGAGGAGATGTATTCATTCAATGCAAGCACCATAGGCAGTATAAACAATACAATATTCATGCAAGGTAATCCAGGATTGAATTTTCTTGTAGCAGAAAAAAATGGATCTAACCCTCGGAGAGATCCTAGGGTGCCTGGGAAACAGCAATCAGTAATCTCCTTCACCAAAAAAGCTACTCCTGGAATCAATGTGGCTGGCGGTGATGGGTTTCCCAGTAAAGTGTTCTTCAATGGGGAGGAATGCTCTCTTCCTTCAGTGCATCCAAGCAGTGGTTTGAGGAAAGAGTTTTCCTTGGCTACTACAGCATTCCTAATTCTGTTGTCAATCATCTTTATGTGGCAATAG 1956 0.4729 MASHVHTCCCFFFFTVAVLSIFAAAPSMSQPQTADSCNGIFLSYAYTGGARLPPNISDPAQQPYRFESRLTVLNNGLEELKSWRVFVGFQHNEWLVSVSNAVLADGTSIPGAVGNGTVFAGSTVTDLKTAAATAGDLSQMQVRVELLGTLFGVAPPNVPMPSNISLANDGFVCGQPTRQGNNETHVCCTSDPSFKTNIARDEEFLPRQNGDLTIMYDVIKAYDSNYWAEVTIANHNPLGRLDNWRLSWDWDNDEFIHTMKGAYPSVVDSSDCVFGSQGTFYKELDFSNVLNCEKRPTIIDLPPTRFNDSVLGKVPFCCRNGTILPPSMDPSKSVSRFQLQVFKMPPNVNRSHLTPPHNWEIRGATLNPDYQCGTPIRVSPTESPDQTGLPSNISAIASWQVVCNITKGKSASPKCCVSFSAYYNESVIPCNTCACGCPRNPERTCSTVAPAMWLPPEALLVPFENRSKMAVDWASLKHLQVPNPMPCGDNCGVSINWHVYTDYRKGWTARITIFNWDETDFADWFAAVQLDKAAAGFEEMYSFNASTIGSINNTIFMQGNPGLNFLVAEKNGSNPRRDPRVPGKQQSVISFTKKATPGINVAGGDGFPSKVFFNGEECSLPSVHPSSGLRKEFSLATTAFLILLSIIFMWQ. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04045 651 PANTHER COBRA-LIKE PROTEIN 7 25 647 - -
Seca6g04045 651 Pfam COBRA-like protein 226 406 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04045 Seca-Chr6 108164677 108167170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04045 37 635 COBRA Gene Family AT4G16120 67.384 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04045 - - vum:124836920 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04045 6 108164677 108167170 Seca6g04045 6 108164677 108167170 ECH
Seca12g00389 12 3383105 3386268 Seca6g04045 6 108164677 108167170 PCT