Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04044 ATGAATCTCAAAGCCTCCATGTCAACGGCAAGTTCAAGTTCTTCTCTCAAGTCCGGCGACGGCGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTACTGGTGGTGGATGATGACCCCACTTGCCTTATGATCCTTGAGAGGATGCTCCGTGCTTGCCTCTATGAAGTTACAAAATGCAAGCGAGCAGAGGTTGCATTGTCTCTTCTAAGAGAGAACAAAAATGGCTTTGATATAGTTTTAAGTGATGTTCATATGCCAGACATGGATGGATTTAAACTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATAATGATGTCAGCTGATGATGGAAAGAATGTGGTAATGAAGGGTGTGACACATGGTGCTTGTGATTACTTGATTAAACCTGTGCGTATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAGTGGGTGGAAAGATCTGGAGCAATCAGGTGGCACAGAAGAAGGAGATCGACAACAAAAGGCATTTGATGATGCAGATTACTCATCCTCAGCGAATGAAGGCAAAAGCAACTCAAAGAAGAGGAGGGATATTGAGGATGAGGATGGAGAGGACAGGGAGGATACTTCCTCGTTAAAGAAGCCACGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGGGTGAGTGGAGTTTCCCAGCAGCAGAGCAACTTTAATAATTCCTTCATCAGCTCACAAGATTCAACATTTGGGGCTACTTCAATAAATGGAATAGATCTTCAAACTCTTCCAGTTGCTGGCCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGGTCACTTGCAAAAGCAGGTATTTCCATGCCTCTAGTTGAGCAAAAGAACCTTTTCAGTTTTGAGAACTCAAAATTAAGATTTGGAGAAGGGCAACTGCAAAACTTGAGCAGTAGTAAACCAATGAACTTTCTTCATGGAATCCCTACCAACATGGAACCAAAGCAGTTTGCCAATTTGCACCAGTCTACCCAATCCCTTGGAAACTTTAATATGCGATTCAACGCTTCTGCTGCGCAGAGAAGCCCCTTGTTGATGCAGATAACTCAGTCTCAACCAAGAGGTCAGATGCTAAGTGAAAATAGTGGTTCTCATGTTACTAGGTTTTCATCATCTTTGGTGCAGCCTACAGGACCAAATGGAATTTCTAATGGTTTTCTAGGTAATGGGATTGCTGATACCAGCAACATAACTTCTGCCTATAATCCAGTTCCACAAAGGTCTTCATTGTTGAGTTTTCCCATGAATCAAACCACAGAAATGCCAGTGAGTAGTTTCCCTCTTAGAAGCACTCCAGGCGTATCCAGTATCACTACAAAAGGCATGTTCCATGAGGAAGTAGGTACTTCAGGAATTAAAGGATCTAGTGGATTTGCTCCAAGTTATGATATTTTTAATGAACTCCATCAGAAATCCCATGATTGGGACTTACCAAACACTGGCCTGACCTATGATGCTTCTCAGCATGCAAATCCTTTACAAAGTAACATTGATGACTCACCATCAACTTTAGTCCATCAAGGCTTTTCCTCTATCCAACACACTGGACAAAATAGAGATGCTACTTTGATTGGAAAAGCTATGATCTCAATAGATGAAGGCATGAATCAAGGTAATCTCCAAAATGTCGGTCAAGACCTCAATTCGCTTCTTGTTGACAATTCAGTAAGAATTAAGGCTGAAAGCAATCCTGATCCAAGCTCCCAGATTAACCTCTTCTCTGAGCCATATGGACAGGAGGATCTTATGAGTGCACTTCTGAAACAGCAAGAAGGCATTGGACAAGTTGAAAATGAGTTTGACTTCGATGGATATTCCATAGACAACATTCCAGTTTAG 2028 0.427 MNLKASMSTASSSSSLKSGDGVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKSGWKDLEQSGGTEEGDRQQKAFDDADYSSSANEGKSNSKKRRDIEDEDGEDREDTSSLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGVSQQQSNFNNSFISSQDSTFGATSINGIDLQTLPVAGQLQAQSLAKLQAAGLGRSLAKAGISMPLVEQKNLFSFENSKLRFGEGQLQNLSSSKPMNFLHGIPTNMEPKQFANLHQSTQSLGNFNMRFNASAAQRSPLLMQITQSQPRGQMLSENSGSHVTRFSSSLVQPTGPNGISNGFLGNGIADTSNITSAYNPVPQRSSLLSFPMNQTTEMPVSSFPLRSTPGVSSITTKGMFHEEVGTSGIKGSSGFAPSYDIFNELHQKSHDWDLPNTGLTYDASQHANPLQSNIDDSPSTLVHQGFSSIQHTGQNRDATLIGKAMISIDEGMNQGNLQNVGQDLNSLLVDNSVRIKAESNPDPSSQINLFSEPYGQEDLMSALLKQQEGIGQVENEFDFDGYSIDNIPV. 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04044 675 PIRSF RR_ARR_type-B 6 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca6g04044 675 FunFam Two-component response regulator 30 167 - -
Seca6g04044 675 SUPERFAMILY CheY-like 29 150 IPR011006 -
Seca6g04044 675 CDD REC_typeB_ARR-like 32 146 - -
Seca6g04044 675 SMART REC_2 30 142 IPR001789 GO:0000160
Seca6g04044 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Seca6g04044 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 266 IPR017930 -
Seca6g04044 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 355 IPR045279 GO:0009736
Seca6g04044 675 SUPERFAMILY Homeodomain-like 208 267 IPR009057 -
Seca6g04044 675 Gene3D - 207 269 - -
Seca6g04044 675 MobiDBLite consensus disorder prediction 153 207 - -
Seca6g04044 675 MobiDBLite consensus disorder prediction 1 21 - -
Seca6g04044 675 MobiDBLite consensus disorder prediction 185 207 - -
Seca6g04044 675 FunFam Two-component response regulator 206 269 - -
Seca6g04044 675 ProSiteProfiles Response regulatory domain profile. 31 146 IPR001789 GO:0000160
Seca6g04044 675 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Seca6g04044 675 MobiDBLite consensus disorder prediction 153 173 - -
Seca6g04044 675 Pfam Response regulator receiver domain 32 140 IPR001789 GO:0000160
Seca6g04044 675 Gene3D - 30 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04044 Seca-Chr6 108157750 108161591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04044 64 675 Response Regulator Gene Family AT3G16857 49.923 1.84e-177 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca6g04044 Response_reg 1.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04044 - K14491 gmx:100809583 1004.2