Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04030 ATGGGACAAGAATCAGATTCCAAAACCCAGTTGGTATTGAAGATTTGTTCCATTTCCACCCGTTCAGTTGTATGTATTCATAAACTTGTCTCAAACCCATCTAAGGCACCTTTCATTGATTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTAAATACCATTCGCAAGCAATACCATAAACTTGCCTTGCAACTTCATCCAGATAAGAATAAACACCCCAAGGCTGAAATTGCATTCAAACTTGTCTCTGAGGCATATACATGTTTATCTGATGCTGCAAAAAGAAAAGCTTTTGACTTGGAGAGATATAAGAGGTTCTGTGTTGAGTGCAATAGAATCCCTTATACATCAAGCATTGTCCCAAGCAATTCCAATGATTCAAGTTTCAAGGCATGGAATATTATCAGCAGGTCAATATCTAGTAAAGTTAGGAGAAATATTAGGGACATGAGAGAAAGATTGAAGGAGGAAGCTAAGGTGATAGAGAACTGTCTGCGGGCAAATTCAATGTCACAGAAAGAATCTTCCCTCTACAATCCAGCTGAGTATCTACATGGAAGCAGGTTCCAGCATAGAGTTGAGAAAGAAACCCCTGTTTTCAACCCATCAAACTACTCACATAAAGGATACCCTCATCCTAGAGACCATGTTTACAAGAATTCTGAGACATGTTGGTACTTGCAGGTAGAAAATATAGTCCATAATGACAAGAGAGAAGCTAAGAGTGAAGCTAAGTATGCCTCTCCGGTTTTTGAGGTCAAATCACAAAGGAGTATGCACACAAGCAAATTTGCTTATGTCTCATCACAATGTTGA 822 0.3917 MGQESDSKTQLVLKICSISTRSVVCIHKLVSNPSKAPFIDWYCILGVEENAGVNTIRKQYHKLALQLHPDKNKHPKAEIAFKLVSEAYTCLSDAAKRKAFDLERYKRFCVECNRIPYTSSIVPSNSNDSSFKAWNIISRSISSKVRRNIRDMRERLKEEAKVIENCLRANSMSQKESSLYNPAEYLHGSRFQHRVEKETPVFNPSNYSHKGYPHPRDHVYKNSETCWYLQVENIVHNDKREAKSEAKYASPVFEVKSQRSMHTSKFAYVSSQC. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04030 273 Gene3D DnaJ domain 39 165 IPR036869 -
Seca6g04030 273 Pfam DnaJ domain 40 101 IPR001623 -
Seca6g04030 273 PRINTS DnaJ domain signature 60 75 IPR001623 -
Seca6g04030 273 PRINTS DnaJ domain signature 42 60 IPR001623 -
Seca6g04030 273 PRINTS DnaJ domain signature 76 96 IPR001623 -
Seca6g04030 273 SMART dnaj_3 39 96 IPR001623 -
Seca6g04030 273 CDD DnaJ 40 93 IPR001623 -
Seca6g04030 273 PANTHER BNAC03G44070D PROTEIN 21 239 - -
Seca6g04030 273 SUPERFAMILY Chaperone J-domain 31 104 IPR036869 -
Seca6g04030 273 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04030 Seca-Chr6 108011778 108013042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04030 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 45.455 1.18e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04030 - - gmx:100778573 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04030 6 108011778 108013042 Seca6g04030 6 108011778 108013042 ECH
Seca12g00365 12 3210999 3212789 Seca6g04030 6 108011778 108013042 PCT