Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04029 ATGGACGCTATCTACTATCTACCATTCACTGATTTCAATCCTCTCCCTTTTTCCCCAAAACTCTGCTTCGTTACTCCTAACTCTTTAACACTTACCTCAACCTCAACGCCATCCTTTGTTTTGCAACAACATCACAGTCACAGACCCATCAATGTGCGTTACCCTCTTGTATGCACAAACGCTTCTTCTTCTCCTTCTTCTGCCTCTTCGCATTCAGGCTCCTTTGCGGAGTCCTACCTCATCAACAATCTTGGCTTCTCACCCGATTCTGCTCTCCAAGCTTCCAAGGAAGCTCGTTTCAACACCTCCCATAAGCCCGATGCAGTTGTGGATTTGTTCATAAAATGGGGTTTCTCAAACCCCCACTTGCATCACATCATTACAAAGGAACCGTGGGTGCTATCTTGCAACCCCCATAAAAGGGTTCTGCCCAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTGCCTCCGACATTGTCTTCATGGTAACCAAGACACCCAGGTTCCTTCGTCGCAGCCTCGAGAATCATATTATCCCCACATATGAATTGTTACATACATTTTTGCAATCTGATAAGGAGACCTTGGCTTGCATAATTCGTAACACGCTTTCCTTTTGTAATAGTCGGATGAGACCTAATATCAAGTTGTTGATTGATTGTGGAGTTTCTGATTCAAACATTGTCCTATTGCTTCGTAAATGGCCTAGTGTATTCTCCTCCTCTAAATTGCTCAAGGAGGTGGAAGAAATAAAGGAATTGGGGTTTAACCCTTCAAAATCAGCTTTTAGTGTAGCATTGCTTGCCAAACTTACTGTTAGAAAACCCCACTGGGATGAGAAAGTTGATGCCTTTAAGAAGTGGGGGTGGTCTGATGAAACCATTCTTGAAGCATTTAGGAGGCAGCCTAACTGTATGTTAGCATCCTGTGATAAAATTAATGCTGTGATGGGATTTTGGGTCCATGAGTTGGGTTGGGATGCTCGGGCCCTTGTCAAAGGAACCAATATTTTTGGATTTAGTTTGAAGAAGAGGATTATTCCAAGGGCTTTTGTTGTCCAGTATCTACTAGCAGAAGGTTTGATAGACGAGAATGCTAGCTTATTTACACCATTTATAATTTCTGAGAAGATGTTCCTGCAGAAGTTTGTGAAATGTTTTAAGGAGAATGAATCATTATCATCCCACCTATTAAAGCTATATCAGGAAAAAATGAATCTTCAAGAATCAAGATGA 1236 0.4167 MDAIYYLPFTDFNPLPFSPKLCFVTPNSLTLTSTSTPSFVLQQHHSHRPINVRYPLVCTNASSSPSSASSHSGSFAESYLINNLGFSPDSALQASKEARFNTSHKPDAVVDLFIKWGFSNPHLHHIITKEPWVLSCNPHKRVLPKFQFLLSKGASASDIVFMVTKTPRFLRRSLENHIIPTYELLHTFLQSDKETLACIIRNTLSFCNSRMRPNIKLLIDCGVSDSNIVLLLRKWPSVFSSSKLLKEVEEIKELGFNPSKSAFSVALLAKLTVRKPHWDEKVDAFKKWGWSDETILEAFRRQPNCMLASCDKINAVMGFWVHELGWDARALVKGTNIFGFSLKKRIIPRAFVVQYLLAEGLIDENASLFTPFIISEKMFLQKFVKCFKENESLSSHLLKLYQEKMNLQESR. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04029 411 FunFam Mitochondrial transcription termination factor-like 174 390 - -
Seca6g04029 411 PANTHER CGI-12 PROTEIN-RELATED 73 388 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 SMART mt_12 328 362 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 SMART mt_12 196 224 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 SMART mt_12 160 191 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 SMART mt_12 229 257 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 Pfam mTERF 111 222 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 Pfam mTERF 209 379 IPR003690 GO:0003690|GO:0006355
Seca6g04029 411 Gene3D Transcription termination factor 3, mitochondrial 191 390 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04029 Seca-Chr6 108005143 108006378 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca6g04029 mTERF 4.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04029 K15032 - mtr:25488156 374.4