Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04026 ATGTCATTTTGCACCAGTAATCTCATGTTTGTGTCACTAACATTTCAGGGTGAACATCTCATTATAGCAAACGTTGGTGATTCTAGGGCTGTCTTGGCAACCACCTCAGAGGATGGCACATTGACTCCTCTTCAGCTTACCACTGACTTTAAGCCAAATTTACCAAAGGAGGCAGAGCGTATAATTCAATCCAGAGGGAGGGTATTCTGTTTGGAAGATGAACCAGGAGTGTGCAGGGTCTGGATGCCAAATGGTAAGACCCCGGGACTAGCAATATCTAGAGCATTTGGTGATTACTGTGTCAAAGATTTTGGACTAATCTCTGTGCCAGACGTGACACAAAGAAAACTTACCACCAAGGATCAATTTGTCATCTTGGCAACAGATGGGGTATGGGATGTTATTTCTAACCAAGAAGCAGTCAAAATTGTTGCTTCAACGCCTCATAAAGAAAAAGCAGCTCAAAGACTCGTGAAATATGCTATACATGAATGGAAATGTAAGAGAAGGGGCATTGCTATTGATGATGTATCAGCTGTTTGCCTCTTCTTTCACTCTCCCCCCTCTCACCAATTCCCTACCACTAAAGTTGTTGAATAA 600 0.425 MSFCTSNLMFVSLTFQGEHLIIANVGDSRAVLATTSEDGTLTPLQLTTDFKPNLPKEAERIIQSRGRVFCLEDEPGVCRVWMPNGKTPGLAISRAFGDYCVKDFGLISVPDVTQRKLTTKDQFVILATDGVWDVISNQEAVKIVASTPHKEKAAQRLVKYAIHEWKCKRRGIAIDDVSAVCLFFHSPPSHQFPTTKVVE. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04026 199 PANTHER PROTEIN PHOSPHATASE 11 182 IPR015655 GO:0004722|GO:0006470
Seca6g04026 199 ProSiteProfiles PPM-type phosphatase domain profile. 1 184 IPR001932 -
Seca6g04026 199 SUPERFAMILY PP2C-like 11 187 IPR036457 -
Seca6g04026 199 Pfam Protein phosphatase 2C 12 163 IPR001932 -
Seca6g04026 199 CDD PP2Cc 15 184 IPR001932 -
Seca6g04026 199 Gene3D - 1 186 IPR036457 -
Seca6g04026 199 SMART PP2C_4 1 182 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04026 Seca-Chr6 107977898 107980460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04026 11 185 PP2C-type Phosphatase Gene Family AT3G05640 67.429 1.13e-87 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04026 - - gmx:100817397 315.079