Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04025 ATGCAGCCCTTAGACATTATTGTTTTTGATGTACTGCCTGCCTCAGATAGAAATGGGGATGGTCGTCTATCACTAGCAAGTGAAATGAAGGAACGAAATCCTTTACGCCATTCATTCAAGGTGACTTGTGGAACCCGGAGCATTAGAATTAGAGTGAAAAGTAGCAGTAAAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCTGAAGGTTGGTGTCATCCTCATCGCTATGGTTCTTTTGCTCCTCCAAGAGGCTTAATCGAAGATGACAGTCAAGCCCAGTGGTTTATAGATGGGCAAGCAGCATTTGAGGCCATTGCTTCTTCAATTGAAGATGCAAAATCAGAGATATTTATTTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGGCGACCTTTCCACACTCATGCTTCATCAAGGCTTGATCATTTGTTGGAAGCAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTATAAGGAGGTGGCTCTTGCTTTGAAAATAAACAGTGTTTATAGCAAGAGAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGATCACTTTTCTACTGGTGTTTACCTGTGGTCGCACCATGAAAAACTTGTCATTGTTGATAACCACATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAAAGTGGGAGATTTCCCTCCTCTAATCTGGCCTGGAAAGGACTATTATAACCCAAGAGAATCTGAACCAAATTCATGGGAAGATACTATGAAAGATGAATTGGAACGTGAAAAATATCCTCGTATGCCTTGGCATGATGTTCACTGTGCCCTTTGGGGACCACCTTGTCGTGACATTGCGAGGCACTTTGTTCAGCGTTGGAATTATGCCAAGAGGAACAAAGCTCCATATGAGCAAGCAATACCATTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCAGTGAGATACAGATTGAAAGCAACAACACTGACAATCATAGAGTCATCAAGAGAGAAGATTCATTTTCCTCATCTTCTCAAGACCAAGATATTCCTCTACTTTTGCCTCAGGAGTCTGGTCCAGATTCTCCTGAAGGAGACTCAAAACCAAATGGGCTAATCTCCTTTCTACATCACCTTGACAAGCCAAGAAGGATAAGCAATGGTCTTCCTTTCTCATTCCGGAAGGCGAAAGTTGCAGCAGTTGGTCCAGATACACCAATGCAGGGCTTTGTAGATGATCTTGACTCTGAGCATCATCATGAAAAAATGTCTCTGGATAGAGTAGCTCATTTTGATTTACAAAATACAGATCCAGATTGGTGGGAAACACAAGAACGGGGTGATCAAGGAGGTTTTGCGGATGAATCAGGACAAATTGGTCCTCGTGCTTCCTGCCGTTGTCAGGTTATTAGGAGCGTCAGTCAATGGTCTGCTGGAACAAGCCAAACTGAAGAGAGCATCCACAGTGCTTATTGCTCTCTTATTGAGAAAGCTGAACATTTCATCTACATTGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGAGATGAGATGATACGTAATCGTGTGTTAGAAGCTTTATATCGACGGATTATGCGAGCTTACAATGACAAAAAAAATTTCAGGGTTATTGTTGTCATACCCCTCCTGCCTGGCTTCCAGGGGGGCCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCACTGGCAGTATCGAACCATTTGCAGAGGGCAGAATTCTATCTTGCATAATCTTTTTGAACTTCTTGGTTCAAGAATACATGATTACATCTCTTTTTATGGCCTGAGGTCTTATGGTAGACTCTCTGATGGTGGTCCTGTGGCAACCAGCCAGGTATATGTTCACAGTAAAATCATGATTGTTGATGATTGTGTAAGTTTGATTGGATCTGCAAATATTAATGATAGGAGCTTACTTGGATCCAGAGATTCTGAGATTGGTGTAGTTATAGAAGACAAAGAGTTGATAGATTCATATATGGATGGAAAGCCTTGGAAAGCAGGAAAGTTTTCTCTGACACTCCGGTTATCATTATGGTCTGAGCACTTGGGTCTCCCAGCAGGAGAGGTCAATCAAATAATGGACCCAGTTGTTCAGTCTACTTACAAGGATATTTGGATGACAATAGCAAAGACAAATACTGCAATTTATCAGGATGTCTTTTCTTGTGTACCTAATGATCTGATACACACCAGACTTGCTTTCAGACAAAGCGTGGCTTTTTGGAAAGAAAGAATTGGACACACGACCATTGATTTAGGAATAGCCCCTGAAAAATTAGTATCCTATCAGGATGGAGATATAAAAAACACCGATCCCTTGGAGAGATTAGCATCCGTAAGGGGTCATCTTGTATCTTTTCCCTTGGAGTTCATGTGTCAAGAAAGTCTAAGACCTGCTTTTAATGAAAGTGAATACTACGCTACTCAAGTTTTCCACTGA 2523 0.4166 MQPLDIIVFDVLPASDRNGDGRLSLASEMKERNPLRHSFKVTCGTRSIRIRVKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDDSQAQWFIDGQAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHTHASSRLDHLLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIVDNHICFIGGLDLCFGRYDTSEHKVGDFPPLIWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQAIPLLMPQHHMVIPHYLGRSSEIQIESNNTDNHRVIKREDSFSSSSQDQDIPLLLPQESGPDSPEGDSKPNGLISFLHHLDKPRRISNGLPFSFRKAKVAAVGPDTPMQGFVDDLDSEHHHEKMSLDRVAHFDLQNTDPDWWETQERGDQGGFADESGQIGPRASCRCQVIRSVSQWSAGTSQTEESIHSAYCSLIEKAEHFIYIENQFFISGLSGDEMIRNRVLEALYRRIMRAYNDKKNFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLFELLGSRIHDYISFYGLRSYGRLSDGGPVATSQVYVHSKIMIVDDCVSLIGSANINDRSLLGSRDSEIGVVIEDKELIDSYMDGKPWKAGKFSLTLRLSLWSEHLGLPAGEVNQIMDPVVQSTYKDIWMTIAKTNTAIYQDVFSCVPNDLIHTRLAFRQSVAFWKERIGHTTIDLGIAPEKLVSYQDGDIKNTDPLERLASVRGHLVSFPLEFMCQESLRPAFNESEYYATQVFH. 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04025 840 CDD PLDc_vPLD1_2_yPLD_like_2 497 681 - -
Seca6g04025 840 SUPERFAMILY Phospholipase D/nuclease 479 688 - -
Seca6g04025 840 PANTHER PHOSPHOLIPASE D 34 830 IPR015679 -
Seca6g04025 840 Gene3D Endonuclease Chain A 90 330 - -
Seca6g04025 840 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 637 664 IPR001736 GO:0003824
Seca6g04025 840 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 205 232 IPR001736 GO:0003824
Seca6g04025 840 Gene3D Endonuclease Chain A 460 697 - -
Seca6g04025 840 MobiDBLite consensus disorder prediction 357 391 - -
Seca6g04025 840 Pfam PLD-like domain 510 686 IPR025202 -
Seca6g04025 840 FunFam Phospholipase 471 691 - -
Seca6g04025 840 SUPERFAMILY Phospholipase D/nuclease 54 325 - -
Seca6g04025 840 SMART pld_4 205 232 IPR001736 GO:0003824
Seca6g04025 840 SMART pld_4 637 664 IPR001736 GO:0003824
Seca6g04025 840 Pfam Phospholipase D Active site motif 205 232 IPR001736 GO:0003824
Seca6g04025 840 ProSiteProfiles PH domain profile. 1 70 IPR001849 -
Seca6g04025 840 CDD PLDc_vPLD1_2_yPLD_like_1 98 242 - -
Seca6g04025 840 PIRSF PLD_euk 331 840 IPR016555 GO:0004630|GO:0006654|GO:0048017
Seca6g04025 840 PIRSF PLD_euk 1 341 IPR016555 GO:0004630|GO:0006654|GO:0048017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04025 Seca-Chr6 107960620 107975509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04025 4 721 Phospholipase D Gene Family (Wang group) AT3G16785 74.619 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04025 K01115 - gmx:100782187 1604.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04025 6 107960620 107975509 Seca6g04025 6 107960620 107975509 ECH