Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04024 ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGGTGTCAAGCGTGGCCGGAAGCTCGCTGCACAGGACCTCTGGTCTGAACTTGACCCTTTCTCTGACCTCCTTGGCTTTGATGCCACCACCCCTACCTCCAAAGATTCATCACCTGTCCAATTTGATGAAATCCCAGGCAAAAAAGCAGTGGTAGCATGTGACAAAGCGGAGAAGAAAAAAGGCGTGGCTGCAGGGAAGAAGAGTCAGCGAGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCAGAGATAAGGGACCCACACAAAGGTGTTCGTGTCTGGCTCGGCACTTTCCCCACCGCTGAAGAAGCCGCCAGAGCCTACGATGAAGCCGCTAAGCGCATCCGCGGTGACAAGGCCAAGCTCAATTTCCCTGCCACCACCGCCACTACTCCTCCGTCTCCACCACCGGAGCACCTTTCCAAGAAGCGGTGTCTCAGCCCTGATCAGATCAGCTCTCAGGCCAGCTCTGACTCCACCGGGTCTGAGGAGCTCGATCTGAAGGAGCAAATCTCAAACCTTGAATGGTTCCTGGGCCTGGAGCAAGAGCCTCCTCAAGCCCAAGCCCAGGCCCAGGCCCAGCCTCAGCCCGAGCTCATGCCCGTCCCGGGTGGTGCGGACTGGGACAACAACTACATGGACCTGTGGACACTTGACGACGTCGTTATGCCTAACCGTCACCTGATTTATTAA 747 0.5636 MCGGAIISDFIGVKRGRKLAAQDLWSELDPFSDLLGFDATTPTSKDSSPVQFDEIPGKKAVVACDKAEKKKGVAAGKKSQRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPATTATTPPSPPPEHLSKKRCLSPDQISSQASSDSTGSEELDLKEQISNLEWFLGLEQEPPQAQAQAQAQPQPELMPVPGGADWDNNYMDLWTLDDVVMPNRHLIY. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04024 248 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Seca6g04024 248 CDD AP2 87 142 IPR001471 GO:0003700|GO:0006355
Seca6g04024 248 MobiDBLite consensus disorder prediction 164 179 - -
Seca6g04024 248 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Seca6g04024 248 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Seca6g04024 248 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Seca6g04024 248 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Seca6g04024 248 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Seca6g04024 248 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Seca6g04024 248 Gene3D AP2/ERF domain 86 145 IPR036955 GO:0003700|GO:0006355
Seca6g04024 248 MobiDBLite consensus disorder prediction 137 184 - -
Seca6g04024 248 PANTHER DNA-BINDING DOMAIN 68 187 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04024 Seca-Chr6 107920234 107922525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04024 1 240 AP2-EREBP Transcription Factor Family AT3G16770 41.304 2.56e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g04024 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04024 K09286 - gmx:100817253 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04024 6 107920234 107922525 Seca6g04024 6 107920234 107922525 ECH