Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04016 ATGCTCACCGCCATCATCCTTCTCTTCTTCGTCGTCGTTTTGATGCTTTGCCTTCATATTTACGCCCGATGGTACCTCCTCCGCGCTCGTCGCCGCCATCTCCGCCGCAACCGCCTTCGCCGTCGCACTCAGCTCATCTTCTACACCGACTCCGACAACCCAACCACCGTTGTCGCCGCCGCCTCTCGCGGCCTTGAAGCATCCGTCATCGCATCGCTCCCCGTTTTCTCCTACGACCCCAAGACCCACCCGGAAAATCCACCTGAATGTGCGGTTTGCTTGTCTGAGTTCGAATCGGGCGAAACGGGTCGGGTCTTACCCAAGTGTAGCCACACATTCCACACTGACTGCATAGACATGTGGTTCCACGCCCACTCTACATGTCCTCTCTGCCGCGCCCCGGTGGAGCCCGAGATCCAGATCCGACCCGAAGTGGTCATAACGGTGTGTGAACCGGAATCCGGTTCAAGTTCCGGGCCGTGCTTGGAAGATGAGAACCGAATCGGCAAGGAGGTTTGTTCGTCGTCGATTGGGATGAGGAGGAAGCCGTCGTTTGTTGGTGTGACCGTTGAGGTGCCGTCGAGGAACGAGAGTTTCCGGGACGAGTCAGGTTGCTGCGACTCGCCGTCAACTCAGTCATCGTTCCGGTCGCCGATGAGTCGCATGCTGTCGTTCAAGAGAATCCTTAGCAGGGAACGGAAGGGAAGCGTTTCACCGTCGTCGTGTGGTGGTTGCAGCTCCGCGAACGAGTTGAACGCGGAGCGAGGTGGCCGAGACGAGACTCAGTGA 789 0.5843 MLTAIILLFFVVVLMLCLHIYARWYLLRARRRHLRRNRLRRRTQLIFYTDSDNPTTVVAAASRGLEASVIASLPVFSYDPKTHPENPPECAVCLSEFESGETGRVLPKCSHTFHTDCIDMWFHAHSTCPLCRAPVEPEIQIRPEVVITVCEPESGSSSGPCLEDENRIGKEVCSSSIGMRRKPSFVGVTVEVPSRNESFRDESGCCDSPSTQSSFRSPMSRMLSFKRILSRERKGSVSPSSCGGCSSANELNAERGGRDETQ. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04016 262 FunFam E3 ubiquitin-protein ligase ATL6 54 138 - -
Seca6g04016 262 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 136 IPR044675 -
Seca6g04016 262 MobiDBLite consensus disorder prediction 234 248 - -
Seca6g04016 262 SUPERFAMILY RING/U-box 70 144 - -
Seca6g04016 262 MobiDBLite consensus disorder prediction 231 262 - -
Seca6g04016 262 Pfam Ring finger domain 89 132 IPR001841 -
Seca6g04016 262 CDD RING-H2_EL5-like 89 132 - -
Seca6g04016 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 140 IPR013083 -
Seca6g04016 262 SMART ring_2 90 131 IPR001841 -
Seca6g04016 262 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04016 Seca-Chr6 107817133 107817921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04016 1 259 Rapid Response to Elicitors AT3G16720 51.071 1.09e-66 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04016 - - lja:Lj6g3v1468220.1 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04016 6 107817133 107817921 Seca6g04016 6 107817133 107817921 ECH
Seca12g00354 12 3117637 3118449 Seca6g04016 6 107817133 107817921 PCT