Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03978 ATGCAGAACGAGGAAGGACAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCTACAAACAGATTGATCACTGCCAAGGACCATGCCTCGGTTCAGATCAACATTGGCCATTTGGATGAGAACGGTATCTACAATGGCCACTTCTCCACCTACGCCCTCTGTGGCTTCGTTCGTGCTCAGGTCTCCATTATATTTTTTCGCTATTTTTTAATCTTATTTTTTAAAATTTCATTACTGTTTATCGTTCCTTGA 255 0.4235 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDENGIYNGHFSTYALCGFVRAQVSIIFFRYFLILFFKISLLFIVP. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03978 84 Gene3D - 1 64 IPR038579 -
Seca6g03978 84 Pfam Ribosomal protein S21e 1 61 IPR001931 GO:0003735|GO:0005840|GO:0006412
Seca6g03978 84 PANTHER 40S RIBOSOMAL PROTEIN S21 1 62 IPR001931 GO:0003735|GO:0005840|GO:0006412
Seca6g03978 84 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03978 Seca-Chr6 107480399 107482053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03978 1 61 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.246 5.92e-38 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03978 K02971 - gmx:100817753 125.946